Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1709 ATGCCAGAGGAATCATTACCACAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTRMCCGGAATGAAAAAGACATATATGGTAGAATCAGGGGCTATAATTGGAGATACCATTATTTCTGGTACAGAAGTTCCTATTAAAATGGGAAATTCCCTACCTTTGAGTGCGAACATAAGCCAGATGAAGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCCACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTAGTAGAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGA 639 0.4272 MPEESLPQGIEGEVISVYTVKSILXGMKKTYMVESGAIIGDTIISGTEVPIKMGNSLPLSANISQMKEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATKTLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPISRKNPQLLGVILHLEEEVEKGINIVII* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1709 212 Gene3D - 45 146 IPR014722 -
Amo10g1709 212 Gene3D Ribosomal protein L2, domain 3 147 212 IPR014726 -
Amo10g1709 212 ProSitePatterns Ribosomal protein L2 signature. 162 173 IPR022671 GO:0003735|GO:0005840|GO:0006412
Amo10g1709 212 SUPERFAMILY Translation proteins SH3-like domain 89 197 IPR008991 -
Amo10g1709 212 PANTHER - 78 200 - -
Amo10g1709 212 Pfam Ribosomal Proteins L2, C-terminal domain 89 190 IPR022669 GO:0003735|GO:0005840|GO:0006412
Amo10g1709 212 PANTHER RIBOSOMAL PROTEIN L2 78 200 IPR002171 GO:0003735|GO:0005840|GO:0006412
Amo10g1709 212 SMART Ribosomal_L2_C_2 51 197 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1709 Amo-Chr10 60096172 60097361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1709 28 180 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 31.429 1.39e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1709 K02886 - csin:14412467 263.848