Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1661 ATGGCTGTTGCTGAGAATGCTGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGACAACAGTGTTGTCTCATCGGACACCACTGAGATGGAGAAATCAAAGGCAAGGTCTGGCGGCGGCGGCGGCGGAGGAGGAGGTGCTGTCAACGGTGGTGGTGGTGATCAGAATCTGAACGGTGTATTCAACCAAGATAGAGGTGCAAACACTGTTGTGTCAGTCACTAACGGTAATTACAAGGCTCAGGTGGGTCAGATTCGAAATGGGTTTGATGGAAACGGTGTCCAGGGTCAACAGATGGTGGTCAACAATGATGGGTATGTTGGGATTAATGCGGTAAGGAATGGGGAGAACTGTGGTGAGAGTTATAAGAGGGAGATGAGGGATTTGGAGGAGCTTTTGTCAAAGTTGAACCCCATGGCTGAGGAGTTTGTGCCGCCGTCGCTCGCCAACAGTCACGGTTACTTGGCTGGTCCTGGTGGTGCTGCTGCTTTTGGATTCGCCAACAATTTTCTGCTCCACAATAATTATGGCAATGCTAATGGCCAGACTAACAGAAGGAGGAAGAATGGCTATAGTCAAGGGAAGCGTAGAGCGAATAATAAGATGGATATGGAGAAAAGGGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTTACCGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGTGGCCAGGTCGTTGACTGCCGCGTATGCGGGGATCCCAATTCTATTCTTCGGTTTGCTTTCATTGAGTTTACGGATGAAGATGGTGCAAGGGCTGCTTTGAGCCTATCTGGAACTATGCTCGGATATTATCCACTTAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTCAACCCAACATTTTTGCCCAGGTCTGAAGATGAACGAGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTCACTCAAGCAGATGTCAAAAGCTTCTTTGAATCTATATGTGGAGAGGTTCACCGCTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCATTCGTTGAGTTTGCACTGGCTGAGAGTGCAATCGCAGCTCTGAGCTGCAGTGGTGTGATTTTGGGTGCACTGCCTATAAGGGTAAGTCCATCGAAGACACCAGTCCGTTCCCGTGCTCCACGCACTGCTATGCACTGA 1197 0.482 MAVAENAGAKIGSSSQNLDNSVVSSDTTEMEKSKARSGGGGGGGGGAVNGGGGDQNLNGVFNQDRGANTVVSVTNGNYKAQVGQIRNGFDGNGVQGQQMVVNNDGYVGINAVRNGENCGESYKREMRDLEELLSKLNPMAEEFVPPSLANSHGYLAGPGGAAAFGFANNFLLHNNYGNANGQTNRRRKNGYSQGKRRANNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKSFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGALPIRVSPSKTPVRSRAPRTAMH* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1661 398 MobiDBLite consensus disorder prediction 9 28 - -
Amo10g1661 398 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 398 - -
Amo10g1661 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 374 IPR000504 GO:0003723
Amo10g1661 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 278 IPR000504 GO:0003723
Amo10g1661 398 Gene3D - 173 290 IPR012677 -
Amo10g1661 398 Gene3D - 297 393 IPR012677 -
Amo10g1661 398 MobiDBLite consensus disorder prediction 178 201 - -
Amo10g1661 398 CDD RRM1_CID8_like 211 290 IPR034823 -
Amo10g1661 398 Pfam Ataxin-2 C-terminal region 133 147 IPR009818 -
Amo10g1661 398 SUPERFAMILY RNA-binding domain, RBD 301 391 IPR035979 GO:0003676
Amo10g1661 398 SMART rrm1_1 214 284 IPR000504 GO:0003723
Amo10g1661 398 SMART rrm1_1 311 382 IPR000504 GO:0003723
Amo10g1661 398 SUPERFAMILY RNA-binding domain, RBD 183 289 IPR035979 GO:0003676
Amo10g1661 398 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 398 - -
Amo10g1661 398 CDD RRM2_CID8_like 306 387 IPR034825 -
Amo10g1661 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 288 IPR000504 GO:0003723
Amo10g1661 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 386 IPR000504 GO:0003723
Amo10g1661 398 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1661 Amo-Chr10 58716402 58720547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1661 212 374 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 1.22e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1661 - - aip:107622933 740.339