Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1660 ATGTCACGGCCGAGGCAGAACAAGATGTTGATGAATCCAAACACTGCCAAACATGTAATTGGTGACACAACCTATACCAAGATCTTTGTTGGAGGCTTAGCTTGGGAAACAAAAAGAGACACTCTGAAACGTTATTTTGATCAGTTTGGAGAGATCTTAGAAGCTGTTGTCATCACTGACAGAAACTCTGGAAGATCAAAAGGATACGGCTTTGTAACATTCAAGGACCCAAATTCTGCAATAAGGGCTTGTCAGAATCCATATCCTGTGATAGATGGAAGGAGGGCTAATTGTAATCTTGCATCTCTTGGTGCACAAAAAATTGATCCATCATCTATGACAGCTACTAGACAAAAATTCAGTAGCCCTTCTTGGAATACAGCACCAATTCCAGTTCATCAAGGAACCTCCACTTATTATAATCAGCATATTCCACAGTATACATTTCCTTATCCACCCTACAGGTATCCAGGTTACCCACCCCAACAGGAAGTATATGAAATGAATTACTATAATGCATATGGTGGACAACACTTTCCATTTCGTTGGTTACCAGCATATTACCAACCAATTTATGGGCTAAGTAGGCATCAATTTGTTCCAACAACAGCTTATGTGAAAAAGACACAATTCCCTGATATGTCACCTCAGGAGTTCACACCTACTGTTGCTTCATCAGAACCTATTTCAGCTTCTTCATCAATTTCTACCACTGGTTTAGTATCCAACTGTGCCATAATTCTGTTTTATTGCACAAACCTATATACGTTGCACAAATACTTCAATAATTTTAGTCACATATATATGCGGCATTAG 816 0.3897 MSRPRQNKMLMNPNTAKHVIGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNSGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLASLGAQKIDPSSMTATRQKFSSPSWNTAPIPVHQGTSTYYNQHIPQYTFPYPPYRYPGYPPQQEVYEMNYYNAYGGQHFPFRWLPAYYQPIYGLSRHQFVPTTAYVKKTQFPDMSPQEFTPTVASSEPISASSSISTTGLVSNCAIILFYCTNLYTLHKYFNNFSHIYMRH* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1660 271 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
Amo10g1660 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Amo10g1660 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Amo10g1660 271 SMART rrm1_1 27 99 IPR000504 GO:0003723
Amo10g1660 271 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 246 - -
Amo10g1660 271 CDD RRM_RBM24_RBM38_like 26 101 - -
Amo10g1660 271 Gene3D - 2 113 IPR012677 -
Amo10g1660 271 PANTHER BOULE-RELATED 1 246 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1660 Amo-Chr10 58695268 58697917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1660 22 161 C2H2 Transcription Factor Family AT2G19380 30.380 3.00e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1660 - - adu:107469851 527.709