Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1647 ATGACAACAATGTTGTTTCTCCTTTGTTTCCTACTCGTTCATATTAGTGGCATTGCATGCAACTTTGCCACAGACAAAGAAGCCCTTCTTTCATTCAAATCCCAAGTCATTGACCCCCAAAACACACTCTCAAGCTGGACGACAGACTCCCAGCATTGCAAATGGTACGGTGTGAAGTGCTCCAATATTGGAAGAAGGGTCAAATCTCTGAATCTAAGAGGACTGAGCCTCTCTGGAAAATTACCCTCTCAACTCTCCAAACTCACTTACCTTCACTCACTTGACCTCTCTGCCAACTCATTCCATGGCCAAATTCCACCAGACATTTCTTACCTTTCCCTTCTCAATATCCTTTTCTTATCTTCCAACAACCTCAGCGGCACAATTCCACCGCAGTTGGGACAACTCAAACGTTTACATAGCTTGGATTTGTCTGTGAATAATCTCACCGGTGAAATCCCTTCAACGTTGTGCAATCTCTCATCTCTTAAGTATCTTGCCATTGCAAGGAATCACTTGTCAGGTGAAATTCCAACTCAAATAGGAAACCTTGGCAATCTTTCGCAGCTTCAACTATCGGAAAACGATCTCAGCGGCCAACTTCCCTCTTCACTCTTCCACATCTCTCAGTTAACATACTTGTCTGTCACAAGCAACAATCTCTCAGGAAAGTTTCCAGCTTCTTTAGGATTTTCACTTCCAAATATAAAGAATCTCTCCCTTGCAACAAATAGGTTTGAAGGGCCGATTCCTCATTTCATATCCAATTCTTCACAACTTGAGTACCTTGATCTTTCTAACAACTTCTTTAATGGGAACTTGCCTTTGTTCAACAACTTTGAAAATCTTGTATACCTTGCTCTTGGAAACAATTCTCTCTCTTCCACCACTTCCTTGAATTCTCAGTTCTTTGATTCCCTCACAAACTCAACTAAGCTTCAAGTTCTCATACTCTATCACAACAATTTGGCTGGAGAACTTCCAAGTTCTATTCAAAATCTGTCTACCAAACTATATTGGTTCTGTGTAGCTGATAATTTTCTCACTGGTAAGATTCCTCAAGGATGGAAGAAACTTCAAAATCTTGAGTTTTTATCTTTTGAATCCAACCATTTCTCTGGTGAGTTGCCATCAGAGATCGGATCTCTAAGTAATCTGGTGGAACTTACAATAGATGACAATGTATTGTCAGGGGAAATACCAGATATTTTTGGGAATCTCACTTCTCTGTCTATTATTTCAATGGCATACAACCAATTCACAGGTAGAATTCACCAAAGTATAGGACAATGCAAGGGACTAAACTCTCTTTATATTGGAATGAATAAGCTTGGTGGAACTATACCAAAGGAGATTTTTGACCTTCCTGGCTTAGTACACTTATCCGTTGGAGGAAACTCATTGCATGGATCAATTTCATCTGGCGTGAGTACCATGAAACAGCTTGAGACATTTGATGTCTCCAACAACCATTTTTCAGGTTCCATTCCTTCTGAAATAGGAGAATGTTCTACCTTGAAGATACTTGAGATGGGGAGAAACAATTTCAGTGGCTTAATCCCAAGTACTCTAGGGAGTTTAGCATCCTTGGAGACTTTGAATCTTTCATCAAATAACCTCAGTGGCATTATTCCTGAAAGTTTGGAGAAGCTGCAGGATCTAAATACATTAAATTTGTCTTTCAACCATTTGGAAGGACAAGTTCCCATGAAAGGAGTTTTCATGAACCTTAGCCGGGTTGATCTCCATGCAAATGACATGCTTTGTAGCATTGACATGGAAATTGCAAGGAAGTTGGGGATACTTTTATGCCATGTGGGCAAAAAGAAGAGACATATTTTACTCCCTATCATTCTTGCAGTTATAGGTGCTACTATTCTTCTCATTTCAATGCTTTATCTGTTGTGGATAGTAATATTCAAAAGGAGGAGAAGTAGAGAGAGCAATGTCAATTCAACATCTGCTCTAGTGATGGGGTTACCCCAAAGTATGTCATACAATGAGATACGGATTGCCACAGAGAATTTCGCAGCTGAAAATTTGATCGGAAAAGGAGCATTTGGATCTGTTTACAAGGGCGAGTTCACCCTAGACACCGGTGAAACCACCACCTTTGCTGTTAAAGTGTTGGACATGCAACAAAGCAAGGCTTGTAAGAGTTTCAATGCAGAATGTGAAGCTTTGAAGAATGCAAGGCACCGGAACCTAGTGAAGGTTATTACTTCTTGTTCCAGTCTTGATTCTAAGGGAGAGGATTTCAAGGCACTTGTTATGCAGTTCATGGCAAGTGGAAACTTGGACATGTGGTTACACCCAAATGATGATGAGTCAGGATCATCTCTTTCTTTGTTGCAAAGATTGAACATCGCCATTGATGTTGCTTCAGCTATGGACTATTTACACCATGATTGTGACCCACCAATAGTCCACTGTGATATGAAGCCAATGAATGTTCTTCTAGATGACAACATGGTTGCACATGTTGGAGACTTTGGATTGGCAAGGCTTCTTCCTGAAAATGCAACACAGAAAGAAAGTGGCACACTTGGACTTAAGGGATCAATAGGCTACATTGCACCAGAATACGGGGAAGGAGGGAAGGTTTCAACAAGTGGAGATGTGTACAGCTTTGGGATCTTAGTGCTGGAGATGTTCATAGGAAAAAGGCCAACTGATGAAATGTTCAAAGAAGGGTTATGCCTAAACAAATTTGCCTCAGCAATGGATGATCATGAGAATAAAGTAATAATGAAGGTTGGTGATGGAAGGTTTCTTACAAATGAGAGTAGTGAATATTCAACACAAAGCTATAGCATTGAGGTAGATAACCATAGTGTGCATCATTGGAGGCGCAAAGCAGAAGAATGTGTAGATGCAGTGATAAGAGTAGGGTTGTCATGTACAGCTCAACAACCTAAAGATCGTTGCACCATGAGAGACACCTCAATTAAGTTGCAAGCAATAAGAAAGTCTATGTTGGCCTTGTGA 2988 0.4043 MTTMLFLLCFLLVHISGIACNFATDKEALLSFKSQVIDPQNTLSSWTTDSQHCKWYGVKCSNIGRRVKSLNLRGLSLSGKLPSQLSKLTYLHSLDLSANSFHGQIPPDISYLSLLNILFLSSNNLSGTIPPQLGQLKRLHSLDLSVNNLTGEIPSTLCNLSSLKYLAIARNHLSGEIPTQIGNLGNLSQLQLSENDLSGQLPSSLFHISQLTYLSVTSNNLSGKFPASLGFSLPNIKNLSLATNRFEGPIPHFISNSSQLEYLDLSNNFFNGNLPLFNNFENLVYLALGNNSLSSTTSLNSQFFDSLTNSTKLQVLILYHNNLAGELPSSIQNLSTKLYWFCVADNFLTGKIPQGWKKLQNLEFLSFESNHFSGELPSEIGSLSNLVELTIDDNVLSGEIPDIFGNLTSLSIISMAYNQFTGRIHQSIGQCKGLNSLYIGMNKLGGTIPKEIFDLPGLVHLSVGGNSLHGSISSGVSTMKQLETFDVSNNHFSGSIPSEIGECSTLKILEMGRNNFSGLIPSTLGSLASLETLNLSSNNLSGIIPESLEKLQDLNTLNLSFNHLEGQVPMKGVFMNLSRVDLHANDMLCSIDMEIARKLGILLCHVGKKKRHILLPIILAVIGATILLISMLYLLWIVIFKRRRSRESNVNSTSALVMGLPQSMSYNEIRIATENFAAENLIGKGAFGSVYKGEFTLDTGETTTFAVKVLDMQQSKACKSFNAECEALKNARHRNLVKVITSCSSLDSKGEDFKALVMQFMASGNLDMWLHPNDDESGSSLSLLQRLNIAIDVASAMDYLHHDCDPPIVHCDMKPMNVLLDDNMVAHVGDFGLARLLPENATQKESGTLGLKGSIGYIAPEYGEGGKVSTSGDVYSFGILVLEMFIGKRPTDEMFKEGLCLNKFASAMDDHENKVIMKVGDGRFLTNESSEYSTQSYSIEVDNHSVHHWRRKAEECVDAVIRVGLSCTAQQPKDRCTMRDTSIKLQAIRKSMLAL* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1647 995 Pfam Protein tyrosine and serine/threonine kinase 679 897 IPR001245 GO:0004672|GO:0006468
Amo10g1647 995 SMART LRR_typ_2 407 431 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 479 503 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 280 306 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 112 135 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 359 383 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 527 550 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 551 576 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 184 208 IPR003591 -
Amo10g1647 995 SMART LRR_typ_2 136 160 IPR003591 -
Amo10g1647 995 ProSiteProfiles Leucine-rich repeat profile. 529 550 IPR001611 GO:0005515
Amo10g1647 995 ProSitePatterns Protein kinases ATP-binding region signature. 682 708 IPR017441 GO:0005524
Amo10g1647 995 Gene3D Transferase(Phosphotransferase) domain 1 761 993 - -
Amo10g1647 995 Gene3D Ribonuclease Inhibitor 277 597 IPR032675 -
Amo10g1647 995 PANTHER - 16 991 - -
Amo10g1647 995 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Amo10g1647 995 SUPERFAMILY Protein kinase-like (PK-like) 656 980 IPR011009 -
Amo10g1647 995 SUPERFAMILY RNI-like 202 584 - -
Amo10g1647 995 SMART LRR_sd22_2 527 556 - -
Amo10g1647 995 SMART LRR_sd22_2 310 336 - -
Amo10g1647 995 SMART LRR_sd22_2 455 478 - -
Amo10g1647 995 SMART LRR_sd22_2 280 301 - -
Amo10g1647 995 SMART LRR_sd22_2 136 162 - -
Amo10g1647 995 PANTHER OS04G0122200 PROTEIN 16 991 - -
Amo10g1647 995 ProSiteProfiles Protein kinase domain profile. 676 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1647 995 Gene3D Phosphorylase Kinase; domain 1 659 760 - -
Amo10g1647 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Amo10g1647 995 SUPERFAMILY L domain-like 23 295 - -
Amo10g1647 995 PRINTS Leucine-rich repeat signature 139 152 - -
Amo10g1647 995 PRINTS Leucine-rich repeat signature 527 540 - -
Amo10g1647 995 SMART serkin_6 676 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1647 995 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515
Amo10g1647 995 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515
Amo10g1647 995 Gene3D Ribonuclease Inhibitor 23 175 IPR032675 -
Amo10g1647 995 Gene3D Ribonuclease Inhibitor 176 276 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1647 Amo-Chr10 57983615 57987016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1647 24 990 Receptor kinase-like Gene Family AT3G47570 40.873 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo10g1647 PK_Tyr_Ser-Thr 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1647 - - gmx:100776054 1205.28