Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1646 ATGGGTGAATTTGGCGTTTCGCTCAAGGAAACTAAAAAAAATAGTGTTGCTGCTGCTACTAGTAATAGTAATGTTCTTGGGTTGGGTAGTGTGAGTAACAAGGTGCAGGTGCAGCAGCAGCAGCAGCATAATAATATTAATATTAATAATAATTATCTTGAAGCATTTCCTAGTAAGACGAGGATGATGATGATGATGATGATGGTGCATCATAATCATCACCACCATCCATTTGACAGTGATTCATCTGCTTCTGCTCTCGGTGATGATGGTGATGGTGATGGTCCCACGCTTCAGCACCATTTGTTAACTACTAATCATAATCATAGTATAAACAACGCTGCAGCTGCTAATAGTGGTGTTAATACCGTTGTTGTTGATGATGATGATGATGGTGCAGCAGCATCTGTAGAAGAAACAAGACAACCTTTGCAGCAGCCATTTCACTTTTCTCACTCTCCGTATTATTCTCCTTCTTCTGCTACTACAACTACAACCACAACCACAACCACTACTCGCTATCCCTTCAAATCGCCAGGAACAAGTGGTGGAATGATGGCGGCATCTTTAGGGAGGTTCCCTTTCACAAGTGCGCAATGGAGGGAACTTGAAAGACAAGCTATGATTTACAAGTACATGATGGCTTCTATTCCTGTTCCTCCTGAGCTACTCCTTATGCCTATCGCTGCTGCTTCTCGCTCATCTCCTTTGGAAGGAGGAGGAGGTGGTGGTGGTTTCAATCTGAGGCTTTCAAGCAGTAACAATAATGATGCAGAACCAAATAGGTGCAGGAGAACAGATGGTAAGAAATGGAGATGTTCAAGAGAGGTTGCTCCTAATCACAAGTACTGTGAGCGTCATATGCATAGAGGCCGTACCCGTTCAAGAAAGCCTGTGGAACTTCACAACAACAACAACAACAATGGACACAATCTACTTAAGAGGGCTCGCCATGATTCTCATCCTTATGCTGCCTCTAGTGCTGCTGTTACTGTCGCATTCTCTAACCACTCTACAAGGAAAGATCCTTCTTCACCTCATTTTCTTGCTTCTGCTACCACCAATCATCATTCATACCTTGAATCTGCTTCTTCCCTTTCTCTTCACAACTTCGGTGCTGGTTCTGTTCCATCAAGTAGGGAGCCCAGGGGGTTGGATTGGATGCTGAATGGAGATCCTATTTCGCTTGGAACATCGGATTCAGAATGGAACACTCTGATGAACAACAACAAAGTTGGATTCAATGCTATGAGTTCCTGCAGTAACACTGAGCCTCAATATATGAACTCATTCCCAGTCTATAGCCCTGGATTGGATCAACAACACAACAAGCGCTCTCCAACTTTCCTTAACCCTGTTCTGGTTCCTATGGAAACTCTCCAATCTGATAAACCAAGGGTTTTCATCGATGCTTGGTCGAACGCGGCAACAGATCAAGAAACTAATGATGCCGATAACAAAAACTCTGTTTCATCAATTGAGAAATTGTCCCTCTCTTCTCTTGATTTATCAATGGGAGGTGGATATATGCATGAAGAAGTGGGGTTAGGCCTAATGGAAGAGCCAGAGCCAGAAGAGAACAACACAAGCAATGGCAATAAATCTGGCTTCTCGAATTGGCCCACACCACCACCTTGGGTAGCTTCAACCACCACACCTGGTGGTCCACTAGCTGAAGTTCTCATGCCAAGTACGGTCACTTCAACCAATGATGGTGCCGCCGCCACTTCCAATTCGAATCTTTCGTCTCCGGCCACGACAATGGTGTCATCTCCATCTGGGGTATTGCACAAGACACTTGCTTCATTGTCTGATAGCAGTAGCAATAGCAGCCCAAGGGTTCCATCTTCAGGGGCAAATTCTGAAATTGCCTTGCTCAGGTTCAATCAGAAGTAG 1896 0.4446 MGEFGVSLKETKKNSVAAATSNSNVLGLGSVSNKVQVQQQQQHNNININNNYLEAFPSKTRMMMMMMMVHHNHHHHPFDSDSSASALGDDGDGDGPTLQHHLLTTNHNHSINNAAAANSGVNTVVVDDDDDGAAASVEETRQPLQQPFHFSHSPYYSPSSATTTTTTTTTTTRYPFKSPGTSGGMMAASLGRFPFTSAQWRELERQAMIYKYMMASIPVPPELLLMPIAAASRSSPLEGGGGGGGFNLRLSSSNNNDAEPNRCRRTDGKKWRCSREVAPNHKYCERHMHRGRTRSRKPVELHNNNNNNGHNLLKRARHDSHPYAASSAAVTVAFSNHSTRKDPSSPHFLASATTNHHSYLESASSLSLHNFGAGSVPSSREPRGLDWMLNGDPISLGTSDSEWNTLMNNNKVGFNAMSSCSNTEPQYMNSFPVYSPGLDQQHNKRSPTFLNPVLVPMETLQSDKPRVFIDAWSNAATDQETNDADNKNSVSSIEKLSLSSLDLSMGGGYMHEEVGLGLMEEPEPEENNTSNGNKSGFSNWPTPPPWVASTTTPGGPLAEVLMPSTVTSTNDGAAATSNSNLSSPATTMVSSPSGVLHKTLASLSDSSSNSSPRVPSSGANSEIALLRFNQK* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1646 631 MobiDBLite consensus disorder prediction 521 556 - -
Amo10g1646 631 MobiDBLite consensus disorder prediction 568 631 - -
Amo10g1646 631 Pfam WRC 258 300 IPR014977 -
Amo10g1646 631 MobiDBLite consensus disorder prediction 75 101 - -
Amo10g1646 631 ProSiteProfiles QLQ domain profile. 194 229 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo10g1646 631 PANTHER - 159 620 IPR031137 GO:0005634|GO:0006351|GO:0032502
Amo10g1646 631 MobiDBLite consensus disorder prediction 524 545 - -
Amo10g1646 631 MobiDBLite consensus disorder prediction 148 180 - -
Amo10g1646 631 PANTHER GROWTH-REGULATING FACTOR 7 159 620 - -
Amo10g1646 631 MobiDBLite consensus disorder prediction 148 178 - -
Amo10g1646 631 Pfam QLQ 194 225 IPR014978 GO:0005524|GO:0005634|GO:0006355
Amo10g1646 631 ProSiteProfiles WRC domain profile. 257 301 IPR014977 -
Amo10g1646 631 SMART QLQ_2 193 230 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1646 Amo-Chr10 57969399 57972400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1646 459 609 GRF Transcription Factor Family AT5G53660 36.943 5.85e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Amo10g1646 WRC 7.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1646 - - adu:107469817 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1646 10 57969399 57972400 Amo20g2153 20 97379095 97382059 hybridization