Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1629 ATGGAACACAGTAAATGTTGGCCGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGCGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCAATTTGCAAGATCTGGGATGAAGGCACCTATTGAGATGGTTGTCCTTAATGAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCAAGGGCTTACTCGCTGAGGGCAACGTGTATGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGGATCCKTTTCAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTCCATTGAACGGATTRAATTTTGTTCCGTTCAAAACAATTCAATCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCTTCTAAGGGTAACTTGGTCGAATTCACACGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTAGACAGAAATTAAGGGTAACGTTGTGGCAGTCTTTTACTTTTGAATTGCTCAAATATCTAGAGGAACACCCGTCTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTATCTAACACAAACTACAATTCGAAACTGTTTATCAASGTTGAGTTTCCAGCTGCCAYGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGATGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGAATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTAAATTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTGAGGGAACTTGATAAAAAATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAYCTGCAAAGTTTCTTGGAGTTTCTGCTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGYAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGGTTTCTGCCTTCCTGGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGYCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAGATTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGGAAGTGGGTTGTGGTGGAGGACTAA 1560 0.409 MEHSKCWPYDLIKCINAGPAHKVWKLKVRVIRLWTVSQFARSGMKAPIEMVVLNEEGDTIQCTVKDIFVPIFKGLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIXFKRDTIVRPVQDSSVPLNGLNFVPFKTIQSESKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIELDDLEGRQKLRVTLWQSFTFELLKYLEEHPSLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFIXVEFPAAXDFFARVNKLDPVDGQGIMPLVCGQPVSDEENFLRLSVYKTIAEIKEHNQDAVFVTAGTIKEVETKFGWWYKGCKKCRRGLRELDKKYFCPNCIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGEXAKFLGVSAKDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMSNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDTGLLSHENSELLSLSTGPYNTSKXCESEPTPSPAVDEKHNSKILGAKKHIEEIGEESVSSKSKKGKWVVVED* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1629 519 PANTHER BNAC07G49340D PROTEIN 36 443 - -
Amo10g1629 519 Gene3D - 272 443 IPR012340 -
Amo10g1629 519 CDD RPA1_DBD_B_like 146 246 - -
Amo10g1629 519 Pfam Replication factor-A C terminal domain 297 420 IPR013955 -
Amo10g1629 519 Gene3D - 120 254 IPR012340 -
Amo10g1629 519 Gene3D - 12 119 IPR012340 -
Amo10g1629 519 SUPERFAMILY Nucleic acid-binding proteins 126 250 IPR012340 -
Amo10g1629 519 SUPERFAMILY Nucleic acid-binding proteins 19 118 IPR012340 -
Amo10g1629 519 CDD RPA1_DBD_A_like 25 113 - -
Amo10g1629 519 CDD RPA1_DBD_C 285 418 IPR013955 -
Amo10g1629 519 PANTHER REPLICATION FACTOR A 1, RFA1 36 443 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo10g1629 519 SUPERFAMILY Nucleic acid-binding proteins 282 431 IPR012340 -
Amo10g1629 519 Pfam Domain of unknown function DUF223 49 139 IPR003871 -
Amo10g1629 519 MobiDBLite consensus disorder prediction 467 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1629 Amo-Chr10 56960171 56964271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1629 8 380 Core DNA Replication Machinery Family AT4G19130 23.737 2.28e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1629 - - adu:107477146 979.163