Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1616 ATGTTCTGTTACAACCTCCTCGACGAGAAGCAGAACAAGCTCGATTACATCCTCTCTCTCACCGTCGTGAACTTCCTCGAGTGCCGCCTCCATATTCTCGTCTTTAAGTCCGGCATAGCCAAGTCCATCCACCAGCGCCACATTAGGTCACAGAGGAGGCTGATTGATCTGGAGGCTTTGGAGAAAGATTTTGAGTTCAAAGAGTTCAACAAAGTTGTAAAGTACAATCCGCATGGCTATCACAATGTCGATAAGGAGGAAAGACCTATTTACATTAAAAGGCTTGGAAAAGTGGATCCAAACAAAATCATGCAAGCTACAACTCTTGACAGATATGTAAAGTATCATATACAAGATTTTGAGAAAGCTTTTGCGATAAAGTTTCCTGCTTACACAATTGCTGCTAAAAGGCACATAGATTCAAACACCACGATCTTAGATGTTCAAAGCATGAACTTTAACAAGACTGACCGAGAACTCATTATGCAATTACAGAAGATTGATAGTGACAATTATCCTGAATTTTCTATCGCCATTCTCGCTGCCGTTCTCGCTGCCGTTTCAGCCGCCAGCGTCGTTACTACTGCCTTAGTCAACTTCCTTCTGTCAATTCAAAGCCTTCATGCTTTGCTCATTTATCTCTGCTATGCTCCTTATCCATCAAGCACTCTCAGGAATCGTCTTCTGACCTTGCTGTTCTTCTCAAAGTTGACGGGGTTCTTATGGATGCATACCGAGTGGGATTATTCTATACAACCTCCTACACAAGAACTTGTGGCTAGGGATTTGCATGATAATGTTTGGATAATGTGCAGTCCTATATATAATCTAAAATAG 837 0.4182 MFCYNLLDEKQNKLDYILSLTVVNFLECRLHILVFKSGIAKSIHQRHIRSQRRLIDLEALEKDFEFKEFNKVVKYNPHGYHNVDKEERPIYIKRLGKVDPNKIMQATTLDRYVKYHIQDFEKAFAIKFPAYTIAAKRHIDSNTTILDVQSMNFNKTDRELIMQLQKIDSDNYPEFSIAILAAVLAAVSAASVVTTALVNFLLSIQSLHALLIYLCYAPYPSSTLRNRLLTLLFFSKLTGFLWMHTEWDYSIQPPTQELVARDLHDNVWIMCSPIYNLK* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1616 278 SUPERFAMILY CRAL/TRIO domain 69 175 IPR036865 -
Amo10g1616 278 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 68 201 IPR001251 -
Amo10g1616 278 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH6 52 176 - -
Amo10g1616 278 Pfam CRAL/TRIO domain 77 179 IPR001251 -
Amo10g1616 278 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 52 176 - -
Amo10g1616 278 SMART sec14_4 68 228 IPR001251 -
Amo10g1616 278 CDD SEC14 66 175 IPR001251 -
Amo10g1616 278 Gene3D - 57 197 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1616 Amo-Chr10 56097668 56100889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1616 1 57 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 60.938 3.84e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1616 - - minc:123213781 189.504