Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1611 ATGCTTGCTGCTGGAAAACTGATTGCTAATGATGTTGTTGCAAAGGAATATCTTGCTTCTGAGATAATTTCTCACTATGTAATACATGGGGTAAGTGTTGCTGAGATTGTAAGGAATATGATCACAGTTATGGGTGCTCTTATTATTGCTTCAACACTTCAAATAGTACTAGGCTTTAGTGGCCTCAGGCGTAACGTTGCGAGGTTGGTCTCTGTTCTTTCAGCAGTGTCGGAGGAAGCATTAATCGAGCCACGCATTGTGCTGCAGAGTTCTACAGATTCGGAGATAATTGGAGATGGCTTCCACTGGAGGAAAAGTTACTACAGATGTACAAATGTGAGGTGTAATGTTCGAAAGCATGTGGAGAGAGCAATAAATGATCCAAGAGCATTTGTCACTACATATGAGGGAAAGCACAATCACGAGATACCAACCAAGAACATCAACCCAAATATCCCCTCTAGGAGAGATTCACAAGCTTCTCTTAGTAAAGACGAACCATGA 504 0.4167 MLAAGKLIANDVVAKEYLASEIISHYVIHGVSVAEIVRNMITVMGALIIASTLQIVLGFSGLRRNVARLVSVLSAVSEEALIEPRIVLQSSTDSEIIGDGFHWRKSYYRCTNVRCNVRKHVERAINDPRAFVTTYEGKHNHEIPTKNINPNIPSRRDSQASLSKDEP* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1611 167 Pfam WRKY DNA -binding domain 104 142 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g1611 167 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 149 IPR044810 GO:0003700
Amo10g1611 167 Gene3D WRKY domain 83 145 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g1611 167 SUPERFAMILY WRKY DNA-binding domain 91 144 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g1611 167 SMART WRKY_cls 97 143 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g1611 167 MobiDBLite consensus disorder prediction 142 167 - -
Amo10g1611 167 ProSiteProfiles WRKY domain profile. 92 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g1611 167 MobiDBLite consensus disorder prediction 144 158 - -
Amo10g1611 167 PANTHER OS12G0507300 PROTEIN 63 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1611 Amo-Chr10 55736551 55739789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1611 78 150 WRKY Transcription Factor Family AT5G07100 48.837 6.99e-25 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo10g1611 WRKY 3.6e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1611 - - gmx:100127379 144.436