Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1587 ATTTGCTCGTTCTTCTTCTCGCGCGTCTTCCCTCCTTCTTCTCGATCGTTCTTTTCCCCTCCTTTCTCACTGATTATGGATGATTTAACCTCAGATTGTCAGCTGAATCAGGGTGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAACCTCTCTCTGTTGTTGATGACCAGTTTGTTCCGAATGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTATAGAAACTATGCCAAGACTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGGCCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGATAAACTTGTTTGATGCTGCATCAGTGGTGCATTCAAATTTCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTAGGTGTATAG 570 0.4123 ICSFFFSRVFPPSSRSFFSPPFSLIMDDLTSDCQLNQGEVDYEFESNEVPEPLSVVDDQFVPNVGMTFTTLEDAGKFYRNYAKTAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKANPTAGLNCPARIYIHTLKDVGAWIISKINLFDAASVVHSNFSQYQGHVMNYQFRVPAAGDNSLGV* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1587 189 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 58 153 - -
Amo10g1587 189 Pfam FAR1 DNA-binding domain 76 153 IPR004330 -
Amo10g1587 189 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 58 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1587 Amo-Chr10 54591487 54592742 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo10g1587 FAR1 1.4e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1587 - - adu:110278638 239.58