Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1522 ATGCATTGCACCATGTATTCAATCCCCACATCATGCCTTGAGCCCGGCGGCTCGGTTCCAGGTCAGCCAGAGCTCCTTCCCCCCTCCCTTGAGGATTCTTTCCGGAGTATCTCCTTCTCAAAGTCGATAGGCCATTCAACTGAATTTAGCAGCTCCAGGTTCTCTGACATACTGGGCGCGGGCAATGAGGACGTGGAGGGAAAGGAGAGACCACTAGTCCTTAAGAACAAGCCTCCACGGTGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACCGTCGCCTCGGTCAAGAATTTCCAGCTGATTGCTGCAAATTCACAACCTGCTGCTCCTCCTCCTCCTGCAGGAACAGGACCACCAACATCTCAGCCGTCGCAGTCTGACCCTGACAAGATCATTCTTCAGTTTGGCAAGGTCGGCAAGGATATGTTCACAATGGACTACCGGTACCCTCTATCAGCATTTCAGGCATTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 534 0.5206 MHCTMYSIPTSCLEPGGSVPGQPELLPPSLEDSFRSISFSKSIGHSTEFSSSRFSDILGAGNEDVEGKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANSQPAAPPPPAGTGPPTSQPSQSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1522 177 ProSitePatterns Tub family signature 2. 162 177 IPR018066 -
Amo10g1522 177 ProSitePatterns Tub family signature 1. 92 105 IPR018066 -
Amo10g1522 177 MobiDBLite consensus disorder prediction 111 134 - -
Amo10g1522 177 Pfam Tub family 1 172 IPR000007 -
Amo10g1522 177 PRINTS Tubby superfamily signature 92 108 IPR000007 -
Amo10g1522 177 PRINTS Tubby superfamily signature 134 153 IPR000007 -
Amo10g1522 177 PRINTS Tubby superfamily signature 155 177 IPR000007 -
Amo10g1522 177 PRINTS Tubby superfamily signature 74 91 IPR000007 -
Amo10g1522 177 SUPERFAMILY Tubby C-terminal domain-like 1 177 IPR025659 -
Amo10g1522 177 Gene3D Tubby Protein; Chain A 32 177 IPR025659 -
Amo10g1522 177 PANTHER TUBBY-RELATED 1 177 - -
Amo10g1522 177 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1522 Amo-Chr10 49848810 49849343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1522 1 177 TUB Transcription Factor Family AT1G25280 68.449 1.17e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo10g1522 Tub 4.8e-55 CL0395