Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1521 ATGTCCTTCCGTAGTATAGTTCGCGATGTAAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGACTTGAGGCTTTCTGGCCATCACAGGGGCAAGTCTCGTAGCTCTGTCCACGAGTTGCATGATCAGCCTCCGGTTATACAGAACAGCCGGTGGGCTAGTCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGGTTGGAGGCTAGTGAGAGTACCTGGCCCGGTCGTAAGCATGTGGTTGCATGCGCAGCTGTGTGCAAAACCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAATACTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAGTCTAAGCTGACATACCATCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAAAGAACCAGAAGGACAACTTGCACAGAATATATTATATCAATGGATGCAGATAACGTATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTGCTGA 576 0.4688 MSFRSIVRDVRDGFGSLSRRSFDLRLSGHHRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKTWREMCKEIVSSPEYCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLAAKRTRRTTCTEYIISMDADNVSRSSSTYIGKLRC* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1521 191 Gene3D - 48 101 - -
Amo10g1521 191 PANTHER TUBBY-RELATED 1 190 - -
Amo10g1521 191 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 190 - -
Amo10g1521 191 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Amo10g1521 191 Pfam F-box domain 53 100 IPR001810 GO:0005515
Amo10g1521 191 SUPERFAMILY Tubby C-terminal domain-like 102 191 IPR025659 -
Amo10g1521 191 Pfam Tub family 114 190 IPR000007 -
Amo10g1521 191 Gene3D Tubby Protein; Chain A 110 191 IPR025659 -
Amo10g1521 191 PRINTS Tubby superfamily signature 185 191 IPR000007 -
Amo10g1521 191 PRINTS Tubby superfamily signature 169 185 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1521 Amo-Chr10 49847559 49848417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1521 1 190 TUB Transcription Factor Family AT1G76900 74.227 1.71e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo10g1521 Tub 2.5e-26 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1521 K19600 - gmx:100817532 364.77