LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g1506	ATGCAAGGTCAAAGAAGGACAACTGGATCATTCCCTGCTATTGTTGGTATGATGCAAGGGCCTAACTCGAGCGGCACTGATATGAATCATCAGTCTTCTTTGAATCATGTGCAAAGTACCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCTTGTTTACGAGCTACTGGTCCTAACATACAGAGTTTTAGTGGCTGGAATACTGGTGAACCGAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCTGAACATGGTCCATCTTCATCATGTAGTGCTACTGCCGAGGATGGTCTCAGAACAGAGGAAAGGTCATTTGAATCAAATAATATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAATCATTCTAGAATTCAGCCTTCTTTTTTGCGAGGATCCAGCTCCAGTCATATAACCCAGAATGGTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCAAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAACAGCATTCAGCAGTGCTTCATACAATCGTCATACTGGAACTTCATCCAAAAACCCTGGATTCATGACTTGGGGAAATAGTGGCAGTTCAAGTTCTGCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACTGGAGGAAGCTCAAACTCTCTTTTACAATCCGAAAATGGATGTTGGCCCACTAATCCTGTTGATCTTAATGTTTCAAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCATTACAGCTGAACTTGAGAAGTGAAGTGAGCCAAGGAGCAACTGATGCATTTCCCTTAATAAATGTCCCAGAAAATGTGGAAAGGCCTCTCAGAAACTTTGATAGGAGAATGGCCCATGTACAGCATCAGGAATCTATACCTCTCAATTTACCATCAACAGTGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCTGGCTCCCACTCATTTAATGATTCTTTGGAATTGAGGTTAACGCCTGGAGTAAATGCTGCCAATTCTGGTGCTCCTCAGAACCAGTCACCTCCCCTTAACATGCCTCCTTTTCCTTGGAATAGAGCTTCTAACCCTAGAGGGGCTAGATCTTCAACTTCTCATAACTCTGTAGAAAGAGTCGTACAGGAAGATTTTAATATAAGAATTTTTCCAAGAGAGAGTTCTGGGCACCCGACAAATGTACCTGCACCCACAGTACATGAACCAACACCTTGGCGTACATCCTCTGCTAATGTAAACAATTCTGGAGGTGTACCTACTACATCTTGGATGGGATCTAGTTCAAACATCGTTCCATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCTACAGATAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCTGCTCCATCCTCTTCAGGATCTTCTTCTATTACTCAGGGGTCCCGCAACAATCAGCCATATCTAAGAGCAGCATTGTTGATGGAAAGGAGGGGTGGCGATGTACTCTCTACTCCGCGAGCATTAACCGTTGACAATGAGGGAAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGATAACTTAAGGGCTGAGGATTATATGCTTTTTGACCCTTTCATATATCATGGGATGGCTGAACTGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGATGTCAGCACTGGATTGAGCGAGGATGTCATTATGAAGTCGATGAAACAGCAAATATACATGTCTGTTATGGCGGAGTCTTCTACAGATCTTGAGCCTTGTTGTATCTGTCAGGAGGATTATACTGAAGGAGAGAATGTTGGCTCGCTAGATTGTGGACATGAATTTCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA	2142	0.4314	MQGQRRTTGSFPAIVGMMQGPNSSGTDMNHQSSLNHVQSTVDFRLSDYRGSTGETACLRATGPNIQSFSGWNTGEPSSRLNLINQVNDEGLKSEHGPSSSCSATAEDGLRTEERSFESNNMIFPVSSNTNLHGNHSRIQPSFLRGSSSSHITQNGNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQTAFSSASYNRHTGTSSKNPGFMTWGNSGSSSSALVNWGSSCKRKALEGSSGQLCTGGSSNSLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVSQGATDAFPLINVPENVERPLRNFDRRMAHVQHQESIPLNLPSTVSSRHHNHSSPHQIPGSHSFNDSLELRLTPGVNAANSGAPQNQSPPLNMPPFPWNRASNPRGARSSTSHNSVERVVQEDFNIRIFPRESSGHPTNVPAPTVHEPTPWRTSSANVNNSGGVPTTSWMGSSSNIVPLPNPSWIVNPEVPTDNLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFIYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIMKSMKQQIYMSVMAESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT*	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g1506	713	PANTHER	ZINC FINGER PROTEIN, PUTATIVE-RELATED	3	713	-	-
	Amo10g1506	713	SMART	ring_2	666	706	IPR001841	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	340	453	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	340	367	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	89	106	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	17	34	-	-
	Amo10g1506	713	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	3	713	IPR045191	GO:0061630
	Amo10g1506	713	SUPERFAMILY	RING/U-box	644	709	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	166	189	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	169	189	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	400	416	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	89	112	-	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	512	533	-	-
	Amo10g1506	713	CDD	RING-H2_TTC3	665	707	-	-
	Amo10g1506	713	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	630	710	IPR013083	-
	Amo10g1506	713	ProSiteProfiles	Zinc finger RING-type profile.	666	707	IPR001841	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	127	154	-	-
	Amo10g1506	713	Pfam	Ring finger domain	666	707	IPR001841	-
	Amo10g1506	713	MobiDBLite	consensus disorder prediction	1	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g1506	Amo-Chr10	47812664	47818184	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g1506	18	713	C3H Transcription Factor Family	AT2G15530	36.339	8.05e-107	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g1506	-		K19041	gmx:100809024	1083.17