Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo10g1504 | AAGTTTCTCACAATCACTCTTTCTCTCTCTCCCCCCACACACATAGACACTCTCTCTAGTCTGTCTCTTACTATGGCCATGAGTGTTGAGAATCAAGACCCTAATGACATAGGATTCTTTTGGGATAACCAACCATGGGATGTCTCAAATTTTGATAACTTAGGTCAAAGAGAAACCAAAGAGAACCTACATATAGAAATGCCTCCTCTGCCACCAGCTCCTACCAACCACCTCACACAGGGAGAAATAGAGAAGAAAAATGAAGAATTAACGATGCCGGTTACAAGCAACAAGAAGCGACGCCGAGCTGACGAAGATGGCAAGAGGCCTATGAAGAATGATGGTAATGATCATGATCTCCATATATGGACAGAGAGAGAACGAAGGAAGAAAATGAGGGACATGTTTGCTAATCTTCATGCTATGCTTCCTCAACTTCCTCCTAAGGCAGACAAGTCATCCATTGTGGATGAAGCAGTGAGGCACATCAAAACTCTGCAACAAACGGTTGAGAATCTCGAGAAAAAAAAGCGACAGAGGATTCAATCTCTCTCTGTCTCTGTGTCACCAATTGCGTGCGAATCTGCTGTGACCAACCCTCAGTGGAACCCTTACGACTCATCATCCTTGTCAAGAGATAATAATGCATTAACTATAACCGCCACTCAACATGTTTCTGCTGCTGTTGCAAATAATTCACCGTTTTTTAAGACTTGGGCTTCACAGAATGTGGTACTGAACATGTGTGGAGAGGAAGCACAGTTCAGCATATGTGCAGAGAAGAAGCCTAGTCTCTTCACCACCATTGCTTTTGTGCTCCAGAAGCATAAGGTTGACGTCATTTCTGCTAGTATCTTGTGCAATCATAATGTCAATAGATACATGGTCCTTACTCATGCAAGTAGGGCTTTACTTCAATTTGCAGACGCAAATACAGTGGAGGAAACTTTCAAGCGTGCAGCTGAGGAGATTATGATGTGGCTCGGCTAA | 990 | 0.4333 | KFLTITLSLSPPTHIDTLSSLSLTMAMSVENQDPNDIGFFWDNQPWDVSNFDNLGQRETKENLHIEMPPLPPAPTNHLTQGEIEKKNEELTMPVTSNKKRRRADEDGKRPMKNDGNDHDLHIWTERERRKKMRDMFANLHAMLPQLPPKADKSSIVDEAVRHIKTLQQTVENLEKKKRQRIQSLSVSVSPIACESAVTNPQWNPYDSSSLSRDNNALTITATQHVSAAVANNSPFFKTWASQNVVLNMCGEEAQFSICAEKKPSLFTTIAFVLQKHKVDVISASILCNHNVNRYMVLTHASRALLQFADANTVEETFKRAAEEIMMWLG* | 330 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo10g1504 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 124 | 167 | IPR011598 | GO:0046983 | |
Amo10g1504 | 329 | PANTHER | - | 35 | 327 | IPR044278 | GO:0003700|GO:0006355|GO:0009960 | |
Amo10g1504 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 119 | 187 | IPR036638 | GO:0046983 | |
Amo10g1504 | 329 | Gene3D | - | 116 | 187 | IPR036638 | GO:0046983 | |
Amo10g1504 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 166 | IPR011598 | GO:0046983 | |
Amo10g1504 | 329 | Coils | Coil | 156 | 183 | - | - | |
Amo10g1504 | 329 | SMART | finulus | 124 | 172 | IPR011598 | GO:0046983 | |
Amo10g1504 | 329 | MobiDBLite | consensus disorder prediction | 85 | 118 | - | - | |
Amo10g1504 | 329 | PANTHER | TRANSCRIPTION FACTOR BHLH95 | 35 | 327 | - | - | |
Amo10g1504 | 329 | CDD | bHLH_AtbHLH_like | 121 | 174 | IPR045239 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo10g1504 | Amo-Chr10 | 47783922 | 47787903 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo10g1504 | 46 | 328 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G49770 | 35.390 | 7.99e-48 | 161 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Amo10g1504 | HLH | 2e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo10g1504 | - | - | adu:107469983 | 603.208 |