Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1398 ATGGAGGCTCCGCATTCTGTTAAAGTTATAACGGTGTCACAGGACGGAAAAGGAGACTACCGGACGGTGCAGGAGGCTATCGATGCGGTGCCGGTAGGCAACACTCGCCGGACGGTGATCCGGGTGGCCCCGGGAACCTACCGGCAGCCTGTTTATGTGGCGAAAACAAAGAGGTTCATCACGCTTTCCGGCATATTCCTTGAGGACACTGTTCTCACATGGAATAACACTGCTGCAAGAATCCAACACCACAAAGGTGAAAAGGTGATAGGAGGAGGAACGTTTGGTTGTGGCAGCACCATTGTGGAAGGTGAAGACTTCATTGCTGAGAACATTACCTTCGAGAATTCTTCCCCTCAGGGTTCAGGGCAAGCTGTGGCAATGAGAGTAACAGCTGATCGATGTGCTTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTCACATTATGGCAATCAATATTTTAGAGATTGCTACATTGAAGGAAGTGTGGACTTCATTTTCGGCAATAGCACTGCACTCTTGGAGCATTGTCATATCCACTGCAAATCTCAAGGCTTCATAACAGCACAGAGCAGAAAATCTCCACATGAAACAACTGGTTTTGTGTTCCAAAGATGTGTTATCACAGGTAATGGGGGAAGGGAATATGCATATCTTGGAAGACCATGGGGACCCTTTGCAAGAGTGGTCTTTGCATTCACTTATATGGATCCATGTATACAACTTGCTGGTTGGAACAATTGGGGTAAAGCTGACAATGAGAAAACTGCTTGCTTTTTTGAATACAGGTGTTTCGGGCCGGGTTATTGCCGATCAAAACGGGTCAAATGGGCCAGAGAAGAAGCAGAACAGTTCTTGCTTCATAGCTTCATTGATCCAGAAGCAAATAAACCTTGGCTTGCTCAAAGAATGGCCTTCAAGGTTCCATATTTTGCTTAG 951 0.4627 MEAPHSVKVITVSQDGKGDYRTVQEAIDAVPVGNTRRTVIRVAPGTYRQPVYVAKTKRFITLSGIFLEDTVLTWNNTAARIQHHKGEKVIGGGTFGCGSTIVEGEDFIAENITFENSSPQGSGQAVAMRVTADRCAFYNCRFLGWQDTLYSHYGNQYFRDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSPHETTGFVFQRCVITGNGGREYAYLGRPWGPFARVVFAFTYMDPCIQLAGWNNWGKADNEKTACFFEYRCFGPGYCRSKRVKWAREEAEQFLLHSFIDPEANKPWLAQRMAFKVPYFA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1398 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 314 - -
Amo10g1398 316 ProSitePatterns Pectinesterase signature 2. 163 172 IPR033131 -
Amo10g1398 316 Pfam Pectinesterase 10 288 IPR000070 GO:0030599|GO:0042545
Amo10g1398 316 Gene3D - 5 311 IPR012334 -
Amo10g1398 316 PANTHER PECTINESTERASE 9 314 - -
Amo10g1398 316 SUPERFAMILY Pectin lyase-like 8 299 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1398 Amo-Chr10 39996827 40002357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1398 4 309 Carbohydrate Esterase AT5G47500 39.185 4.26e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1398 K01051 - gmx:100810259 541.576