Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1323 ATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAATATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGGACACCATCGCCGACATAATAACCTCTATACGAAATGCTGACATGAATGGAAGAGGAACGGTTCTAATACCATGTACTAACATTACTAAAAACATTGCTAAAATGCTTTTACGAGAGGGTTTTATTGAAAACGTGAGAAAACATAGGGAAGGGGGAAATCTTTTTTTAGTTTTAACTCTACCATATAGAAGAAATAGAAAAGGATCATCTAAAATGCGTTTGAATTTAAAACGGATCAGTACTCCTGGTCTACGAATCTATTCTAATTATCAACAAATTCCAAGAATTTTAGGGGGGATGGGAATTGTCATTATTTCTACTTCGAGAGGTATAATGACAGATCGAGAGGCTCGATTAGAACGAATTGGCAGAGAAGTTTTATGTTATATATGGTAA 630 0.3587 IKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEDTIADIITSIRNADMNGRGTVLIPCTNITKNIAKMLLREGFIENVRKHREGGNLFLVLTLPYRRNRKGSSKMRLNLKRISTPGLRIYSNYQQIPRILGGMGIVIISTSRGIMTDREARLERIGREVLCYIW* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1323 209 Pfam Ribosomal protein L14p/L23e 1 78 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 Gene3D Ribosomal protein L14 1 78 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 SMART Ribosomal_L14_2 1 80 IPR000218 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 ProSitePatterns Ribosomal protein S8 signature. 179 196 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 Pfam Ribosomal protein S8 79 209 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 Gene3D - 152 209 - -
Amo10g1323 209 Gene3D - 79 150 - -
Amo10g1323 209 ProSitePatterns Ribosomal protein L14 signature. 18 44 IPR019972 -
Amo10g1323 209 PANTHER 37S RIBOSOMAL PROTEIN S8, MITOCHONDRIAL 78 208 - -
Amo10g1323 209 Hamap 30S ribosomal protein S8 [rpsH]. 76 209 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 SUPERFAMILY Ribosomal protein L14 1 78 IPR036853 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 PANTHER 40S RIBOSOMAL PROTEIN S15A 78 208 IPR000630 GO:0003735|GO:0005840|GO:0006412
Amo10g1323 209 SUPERFAMILY Ribosomal protein S8 79 209 IPR035987 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1323 Amo-Chr10 33931693 33932694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1323 1 76 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.526 1.63e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1323 K02994 - gmx:3989332 216.468