Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1301 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCCTCAGAAGGGTCGGCAGGGGTTAAGCCCCCACCTGTTGAGACTGTTACCGTCGCTTGCCCTGACCATCTGGTTCTTGCTGATCTACCTGTTGCAAAGGGCATTGGATCAGCTACTGCTGCTTCGCTTGTCAAGACGTTGGGCCGTAGATCACGCCGCCAGCTCGGTGAGCGGGTCCATTTCTGCGTTCGCTGTGATTTTCCAATTGCTATATATGGACGACTGAGCCCTTGTGAGCATGCATTTTGTCTCGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAAAAGATTCAGACAATCAAAATGATGGAAGGAATCCTCATATGTGCAGCTCCTCATTGTCTCAAGTCTTTCTTGAAGAAGGCTGAATTTGAGTCTCATATCCAAGACAGCCACTCTAACCTCCTTCGACCAAATGCAGATAAAGAAGATGGAAATGAGTCCGAGGTACAGAGTGTTAGGCAATCTACGGCTTCAGATGCTCGAGGTCCACAAAGGCCAGTTTTCTCTCCTGGATCAAATTCGCAGCAGCATGATCCAGAAGACAAAACACGTCGACAGCCACCAAGAGATCAACCACCTTCAAGGGGAAATCTGCAGCCAAAGCCACCATTTTTTGGTCAACAAAATCACCCTTCTGACCCCATGCCAAGCTCTGGTTTAGGGATTCAACAGAGCTTCCATCAACAAAGTTTTGACATGCCACATCCCACCCAAGAACCTTCCCTGTTTGGTGACAGGCAGCAATCAATTGGTCCAGAGACCTCATTTCCTGAGTATCCACCAATGCATTCTGGTCCCAATATGCCTACAATGGTTGCTTCAAACCCAATGATGAACCCTCCTATGCCATTTGGTTATCCCCCTTACCCACAGGATCGTGCTCAACCGTTTTATGGTGCTCCCTATGATATACCTAGGCAGGATTCGGCATCTGATATGGGTGGAGACCAGAGTTCGTTACTGGGTTTCCCACAAGGGGTCCCAGGTGGCCCAAATTTCCCTGGAAATTATCCCCAGCCCTGGCATGCAGGAATTGGTGGTGTGCCTTTTGAACAAGGACCGGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGCGTATTGGCACCACAGCCCATGAGCCTCCCACCGCCACCACCGCCTCCACCCCACATGTCACACATGAAGCAGAATTACTATCCTGGTGATGTTGGGCATGAAGGTCAGGGTTATGGATGGCAACATGATAGTCGTGATAGCTTTGGTGGCCAAGGCTAG 1308 0.4969 MLQIRLSKAPASEGSAGVKPPPVETVTVACPDHLVLADLPVAKGIGSATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKAEFESHIQDSHSNLLRPNADKEDGNESEVQSVRQSTASDARGPQRPVFSPGSNSQQHDPEDKTRRQPPRDQPPSRGNLQPKPPFFGQQNHPSDPMPSSGLGIQQSFHQQSFDMPHPTQEPSLFGDRQQSIGPETSFPEYPPMHSGPNMPTMVASNPMMNPPMPFGYPPYPQDRAQPFYGAPYDIPRQDSASDMGGDQSSLLGFPQGVPGGPNFPGNYPQPWHAGIGGVPFEQGPGGMVVDPRDAKGVLAPQPMSLPPPPPPPPHMSHMKQNYYPGDVGHEGQGYGWQHDSRDSFGGQG* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1301 435 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Amo10g1301 435 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Amo10g1301 435 MobiDBLite consensus disorder prediction 388 404 - -
Amo10g1301 435 MobiDBLite consensus disorder prediction 166 193 - -
Amo10g1301 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Amo10g1301 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 409 - -
Amo10g1301 435 MobiDBLite consensus disorder prediction 383 435 - -
Amo10g1301 435 MobiDBLite consensus disorder prediction 146 165 - -
Amo10g1301 435 MobiDBLite consensus disorder prediction 218 271 - -
Amo10g1301 435 MobiDBLite consensus disorder prediction 146 282 - -
Amo10g1301 435 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Amo10g1301 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 409 IPR040383 GO:0016567|GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1301 1 432 C2H2 Transcription Factor Family AT5G01160 43.764 1.93e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1301 K15685 - gmx:100817582 722.235