LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g1299	ATGGTTGGTGGTGGTGGAAATGGAGAGAGACCGCCGTGGAAGGCGGCAAATAGTGGCGGCGGCGTGGAGGAGCAGCCACCACAGAGACCGAGCATCACTCTGCCGACACGTGGCGGTGGTGGTGGTTCCATGGAGAGTCTTTTCGGCGGCGGTTTCAGCCCTGGTCCGATGACACTAATCTCAAGCTTCTTCGGCGGCGACGATGGCAATAAGTCGTTCTCTCAGCTTCTCGCCGGAGCCATGGCATCTCCAACGGCGGCGGCGGGGCCCAGTGGCCTGATTGATTCTCCTTCTGCCTTGTTTTCATCTTCTCAGGTTCCCCTAGGACATCAGCAGGCATTATTAGCACAGGTCACTAGTCAAGGAACACAACTACACTCAAGTATGCAAGTCCAACCTCAAGATTCACTGCAAACAATGTCTGCTACTACGACATTCGCACAAGTTCACGCTGCAAACACTTCCAACAACAATACTAATCCACACATGGTAGAGCCTTCTTCTTCCTCGTTGAATGTTGATAAGCCTGCTGACGATGGCTACAATTGGAGGAAATATGGCCAAAAACAGGTGAAGGGTAGTGAGTTTCCTAGGAGTTACTACAAGTGCACTCATGCAAGTTGTCCTGTGAAGAAGAAAGTTGAGAGGTCATTAGATGGACACATTACTGCAATTATATATAAAGGAGAGCACAATCACCAGCGTCCGAATAGGCGCTCGAAAGATGCTGCCATGGCATCGAGTGAAGGCTCAAACATGCAAGGGAATGCTGATTATCATCATGATCATGGTACATGTGCTAATCACCCTAGAATGGATGCAGAATCTAGTCAGGCTACAGGTGAACACCTTTCAGGAACAAGTGATAGTGAGGAAGTAGGTGATCATGAAAATGAGGTGGATGACAAAATTGTTGAGCCTGATCCCAAGAGGAGAAATACAGAGGTGACACACTCAGATCCAGATTCTTCACATAGGACAGTCACAGAGCCAAGAATCATTGTGCAAACAACAAGCGAAGTTGATCTCTTAGACGATGGCTATAGATGGCGAAAGTATGGACAAAAAGTTGTCAAAGGCAATCCATATCCTAGGAGCTATTACAAATGTACAACACCAGGTTGTAATGTTAGGAAGCATGTTGAGAGAGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAGCATAACCATGATGTACCAGCAGCTAAGATTAATAGCCACACTATTGCCAACAATAGTTCATCACAGTTTAAATCACAAAATAGTAATATACCTCAGATGCATGGTTTTGGAAGCAAAGGTATTGGGGTCAATGAGCAACAGCAACAGCCTGTGGCGCGTCTAAGGCTGAAGGAAGAGCAGATAACATAG	1383	0.4657	MVGGGGNGERPPWKAANSGGGVEEQPPQRPSITLPTRGGGGGSMESLFGGGFSPGPMTLISSFFGGDDGNKSFSQLLAGAMASPTAAAGPSGLIDSPSALFSSSQVPLGHQQALLAQVTSQGTQLHSSMQVQPQDSLQTMSATTTFAQVHAANTSNNNTNPHMVEPSSSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHASCPVKKKVERSLDGHITAIIYKGEHNHQRPNRRSKDAAMASSEGSNMQGNADYHHDHGTCANHPRMDAESSQATGEHLSGTSDSEEVGDHENEVDDKIVEPDPKRRNTEVTHSDPDSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKINSHTIANNSSSQFKSQNSNIPQMHGFGSKGIGVNEQQQQPVARLRLKEEQIT*	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g1299	460	MobiDBLite	consensus disorder prediction	227	242	-	-
	Amo10g1299	460	SUPERFAMILY	WRKY DNA-binding domain	336	404	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	SUPERFAMILY	WRKY DNA-binding domain	175	236	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	ProSiteProfiles	WRKY domain profile.	339	404	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	MobiDBLite	consensus disorder prediction	154	174	-	-
	Amo10g1299	460	MobiDBLite	consensus disorder prediction	440	460	-	-
	Amo10g1299	460	ProSiteProfiles	WRKY domain profile.	178	236	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	SMART	WRKY_cls	177	235	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	SMART	WRKY_cls	344	403	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	MobiDBLite	consensus disorder prediction	271	287	-	-
	Amo10g1299	460	MobiDBLite	consensus disorder prediction	1	51	-	-
	Amo10g1299	460	MobiDBLite	consensus disorder prediction	288	327	-	-
	Amo10g1299	460	MobiDBLite	consensus disorder prediction	227	329	-	-
	Amo10g1299	460	Pfam	WRKY DNA -binding domain	345	401	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	Pfam	WRKY DNA -binding domain	178	234	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	89	459	IPR044810	GO:0003700
	Amo10g1299	460	Gene3D	WRKY domain	329	405	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	Gene3D	WRKY domain	165	237	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Amo10g1299	460	PANTHER	WRKY TRANSCRIPTION FACTOR 58-RELATED	89	459	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g1299	Amo-Chr10	31602732	31611645	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g1299	29	460	WRKY Transcription Factor Family	AT2G03340	48.571	1.15e-135	399

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Amo10g1299		WRKY	1.1e-25	CL0274