Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1281 ATGGCTCAAGCAACGAACGGTGGGGATCTGAATCAGAATGGACAGCAGCAGAGTCAGCAGCAGTGGGCGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAGTATCCAGCAACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCGTATGTTCATCCTCACCATTACCAGCCTCCGCCGCCGCCGCCGACCGCTCACCACCACCACCAGCATCATTTCAAGCAGCAGCAGACTCCGCCGCCGTCGTCTCAACCGCCGCAGCAGCACCACAACAACCACCATGGCCAGCAGAAGCAGCAATCTGGCTCCAACGGCGAAGAGATCAGGACGATCTGGCTCGGCGACCTTCACCATTGGATGGACGAGAACTACCTCGTCAATTGCTTTGCTCACACCGGCGAGTCTTTGGTGTTTGTTACTGTAAGATGTCTAGGAGTTGCCATGGGGTGGTCCAAGTGGTCCCCTAATCTGAAGGCTGAAGATGTTTTATCAGCCAAGGTCATACGAAATAAGCAGACAGGTCAGTCAGAGGGATATGGATTCGTGGAGTTTTATTCACGAGCAACAGCTGAGAAAGTTTTGCAGAACTATAATGGTACAATGATGCCAAATACAGATCAGGCATTCCGGCTGAATTGGGCTACATTCAGTACAGGCGATAGGCGATCTGATGCTGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCTATAGATGTTACTGATGCTATGCTGCAAGAGACTTTTTCTAGTAGATATTCATCCATTAAGGGAGCAAAAGTTGTAATTGATTCTAATACTGGCCGTTCCAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACTGAAATGAATGGCATTTATTGTTCAAGTAGGCCTATGAGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTATCAGCAACAATATTCTTCACAAGCCGTAGTGTTGGCTGGTGGACACCCATCTAATGGTGTTGTGGCCCAAGGTTCCCAGGCTGAAGGAGATCTTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCGGTGATGATGACCTCAGACAACCCTTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAGATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTCGCTGACAGAAAAAATGCCGAGGAAGCCATTCAGGCATTGAATGGGACTGTAATTGGGAAACAGACAGTGCGTCTTTCATGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAGCTGATTCCAATGGAAACCATTATGGTGGTCAAGGTTATGGGAATCATGGATTTGCTGTGAAACAGAATCAGGATATAGCAGTGCAGCCTGCTACTGCAATTCAAGGGGCTTCATAA 1428 0.4783 MAQATNGGDLNQNGQQQSQQQWAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQPPPPPPTAHHHHQHHFKQQQTPPPSSQPPQQHHNNHHGQQKQQSGSNGEEIRTIWLGDLHHWMDENYLVNCFAHTGESLVFVTVRCLGVAMGWSKWSPNLKAEDVLSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSTGDRRSDAATSDLSIFVGDLAIDVTDAMLQETFSSRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHPSNGVVAQGSQAEGDLNNTTIFVGGLDSDIGDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRADSNGNHYGGQGYGNHGFAVKQNQDIAVQPATAIQGAS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1281 475 CDD RRM3_NGR1_NAM8_like 357 428 - -
Amo10g1281 475 CDD RRM1_SECp43_like 119 226 - -
Amo10g1281 475 SUPERFAMILY RNA-binding domain, RBD 237 333 IPR035979 GO:0003676
Amo10g1281 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 318 IPR000504 GO:0003723
Amo10g1281 475 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 169 474 - -
Amo10g1281 475 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 144 - -
Amo10g1281 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 225 IPR000504 GO:0003723
Amo10g1281 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 423 IPR000504 GO:0003723
Amo10g1281 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 311 IPR000504 GO:0003723
Amo10g1281 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 214 IPR000504 GO:0003723
Amo10g1281 475 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 169 474 - -
Amo10g1281 475 MobiDBLite consensus disorder prediction 1 23 - -
Amo10g1281 475 SUPERFAMILY RNA-binding domain, RBD 106 223 IPR035979 GO:0003676
Amo10g1281 475 Gene3D - 72 230 IPR012677 -
Amo10g1281 475 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 144 - -
Amo10g1281 475 MobiDBLite consensus disorder prediction 63 114 - -
Amo10g1281 475 Gene3D - 231 339 IPR012677 -
Amo10g1281 475 Gene3D - 341 461 IPR012677 -
Amo10g1281 475 SUPERFAMILY RNA-binding domain, RBD 350 454 IPR035979 GO:0003676
Amo10g1281 475 CDD RRM2_SECp43_like 238 317 - -
Amo10g1281 475 MobiDBLite consensus disorder prediction 96 114 - -
Amo10g1281 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 430 IPR000504 GO:0003723
Amo10g1281 475 SMART rrm1_1 119 221 IPR000504 GO:0003723
Amo10g1281 475 SMART rrm1_1 240 314 IPR000504 GO:0003723
Amo10g1281 475 SMART rrm1_1 359 426 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1281 Amo-Chr10 30228495 30232021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1281 240 444 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 5.59e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1281 - - gmx:100814564 608.601