LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g1267	ATGGAAAAAGAACCTCCCAAAACCAAGCAAATACCTGTGGTTGTCATGGCATTTGTTATGAGTGTGTTTTGGATATCTACCACAGTTGGAGAACTGACTAATTTGAGGTTCCAGAGCCATGCTGTCCTTGCTTTCCACGAAGCTGCTGAAGCCTACTTGGTTGGTTTGTTTGAGGACACCAACTTGTGTGCCATTCATGCCAAGAGGTCACCATAA	216	0.4444	MEKEPPKTKQIPVVVMAFVMSVFWISTTVGELTNLRFQSHAVLAFHEAAEAYLVGLFEDTNLCAIHAKRSP*	72

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g1267	71	PANTHER	HISTONE H3	33	69	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Amo10g1267	71	SUPERFAMILY	Histone-fold	20	69	IPR009072	GO:0046982
	Amo10g1267	71	PANTHER	HISTONE H3.3	33	69	-	-
	Amo10g1267	71	PRINTS	Histone H3 signature	32	50	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Amo10g1267	71	PRINTS	Histone H3 signature	66	71	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Amo10g1267	71	PRINTS	Histone H3 signature	50	66	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Amo10g1267	71	Pfam	Core histone H2A/H2B/H3/H4	33	70	IPR007125	GO:0003677
	Amo10g1267	71	Gene3D	Histone, subunit A	13	71	IPR009072	GO:0046982
	Amo10g1267	71	SMART	h35	3	70	IPR000164	GO:0000786\|GO:0003677\|GO:0030527

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g1267	Amo-Chr10	28986933	28990212	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g1267	1	34	Antiporters	AT1G08960	70.588	1.48e-12	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g1267	K11253		-	osa:4336000	71.2478