Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1260 ATGGGTTCGGTTCCTGCAGAACTGAGCTTAGACATTAGACCACCAACGCCACCACCCCCACCACCACCGTCAACACCAAGTTTCATTCCCAAAACCATAACTGATTTCCTCTCCGCGCTTTCAACCACGGGAATCACCGCATCTGAGAAGCAATCCAGGATCAACGGTTTCCTCTCTCACTTGGAAGACGAATACAACAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCCTCAGCGACGCAATTGTGGCACTGAAAGAGGAATTGGAGAAATGCAGTGAAGGTGAGCGTAAATCTGAGCCAGTGCTGGAAGTGTTCATTCCTTTGAAGAGAGAGTTCGATCATAGCGAAGACGATGAAGAACATAATAATAATAATAATAATGATAATAACAACAACAATAACAATATTCGGCAGGAGAAAGAATGCAGAGATAAGATGAGTTGGATGAGTTCCGTTCAGCTCTGGAACGCTTCTTCTTCAACCACACTTAACAATAATAATAATAATAATGCCTTTGATAATAATCACAAACACCATCACCAAAATCATCATCATAAATTCGGAACAAAGAAGAATCAGGAATTTGTGGTTGAGAATCCTTTTCAATCTCATAGCAATGTTAGAAATAATGGAGGAAGAGGGTTTATGCCTTTTACTTCATACACTTCTTGTTCAGTGCCGGTCACTACTGTGGCTCTCTCTGCAACCAAAGAAGAGAAGGAAGATATTGGTGCTATTAATAGGCTTCCTCTGTTGACCCCTGCTGCTGCTGGTGGTGGAGTGAAGACTCTCAGGGAAGGTTCTGGTTCGAGTGGATCCAGAACCAGCTCCAACAACAGGCCGGTTTCCACGTCTTCTCCTCCGGCGGCTGCCCACCGCACTGCCATGATGCCTCTTCAGCCTCAGCAGACTGCTAGGAAACAGAGGAGGTGCTGGTCCCCGGAGCTGCACCGACGATTTGTCAATGCGTTGCAAAAGCTTGGTGGTTCTCAAGTGGCAACACCAAAGCAGATTAGAGAACTCATGCAGGTTGATGGACTCACAAACGATGAAGTGAAGAGCCATTTACAAAAATACCGGCTTCATACAAGAAGAGTTCCATCTGGAAGTGGTAACCATAGTCATAATCATAATCAATCTGTCGTAGTTCTTGGAGGATTGTGGATGTCACAAGGGCAAGATCAGTGCAATGACTCATCAAAGGGTAGTAGCTCTGGTTCGGGTTCGCCGCAGAGCCCCCTGCATTTAGCCACCAGATCTCGGGGAGGAATGTCCCCGGCTGAGGCTGATGACAGCATGGAAGATGATGAAGATGCAAAATCAGAAAGCTATAGTTGGAAAAGCCACACTCATCACAAACAAGTAAAAGTTGTTGATGTATAG 1398 0.4578 MGSVPAELSLDIRPPTPPPPPPPSTPSFIPKTITDFLSALSTTGITASEKQSRINGFLSHLEDEYNKIHAFKRELPLSMLLLSDAIVALKEELEKCSEGERKSEPVLEVFIPLKREFDHSEDDEEHNNNNNNDNNNNNNNIRQEKECRDKMSWMSSVQLWNASSSTTLNNNNNNNAFDNNHKHHHQNHHHKFGTKKNQEFVVENPFQSHSNVRNNGGRGFMPFTSYTSCSVPVTTVALSATKEEKEDIGAINRLPLLTPAAAGGGVKTLREGSGSSGSRTSSNNRPVSTSSPPAAAHRTAMMPLQPQQTARKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSGSGNHSHNHNQSVVVLGGLWMSQGQDQCNDSSKGSSSGSGSPQSPLHLATRSRGGMSPAEADDSMEDDEDAKSESYSWKSHTHHKQVKVVDV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1260 465 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 312 367 IPR006447 GO:0003677
Amo10g1260 465 MobiDBLite consensus disorder prediction 1 25 - -
Amo10g1260 465 PANTHER TRANSCRIPTION FACTOR HHO6 25 456 - -
Amo10g1260 465 Gene3D - 311 369 - -
Amo10g1260 465 SUPERFAMILY Homeodomain-like 309 370 IPR009057 -
Amo10g1260 465 MobiDBLite consensus disorder prediction 271 295 - -
Amo10g1260 465 MobiDBLite consensus disorder prediction 397 423 - -
Amo10g1260 465 MobiDBLite consensus disorder prediction 444 465 - -
Amo10g1260 465 Pfam Myb-like DNA-binding domain 314 365 IPR001005 -
Amo10g1260 465 MobiDBLite consensus disorder prediction 262 312 - -
Amo10g1260 465 MobiDBLite consensus disorder prediction 11 25 - -
Amo10g1260 465 MobiDBLite consensus disorder prediction 397 465 - -
Amo10g1260 465 MobiDBLite consensus disorder prediction 119 141 - -
Amo10g1260 465 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 25 456 IPR044787 GO:0003700|GO:0006355
Amo10g1260 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 309 369 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1260 Amo-Chr10 27939695 27942815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1260 6 394 G2-like Transcription Factor Family AT2G03500 35.338 2.13e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo10g1260 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1260 - - adu:107470076 796.964