Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1259 ATGGGTTCGGTTCCTGCAGAACTGAGCTTAGACATTAGACCACCAACGCCACCACCCCCACCACCACCGTCAACACCAAGTTTCATTCCCAAAACCATAACTGATTTCCTCTCCGCGCTTTCAACCACGGGAATCACCGCATCTGAGAAGCAATCCAGGATCAACGYTTTCCTCTCTCACTTGGAAGACGAATACAACAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCCTCAGCGACGCAATTGTGGCACTGAAAGAGGAATTGGAGAAATGCAGTGAAGGTGAGCGTAAATCTGAGCCAGTGCTGGAAGTGTTCATTCCTTTGAAGAGAGAGTTCGATCATAGCGAAGACGATGAAGAACATAATAATAATAATAATAATGATAATAACAACAACAATAACAATATTCGGCAGGAGAAAGAATGCAGAGATAAGATGAGTTGGATGAGTTCCGTTCAGCTCTGGAACGCTTCTTCTTCAACCACACTTAACAATAATAATAATAATAATGCCTTTGATAATAATCACAAACACCATCACCAAAATCATCATCATAAATTCGGAACAAAGAAGAATCAGGAATGTGTGGTTGAGAATCCTTTTCAATCTCATAGCAATGTTAGAAATAATGGAGGAAGAGGGTTTATGCCTTTTACTTCATACACTTCTTGTTCAGTGCCGGTCACTACTGTGGCMCTCTCTGCAACCAAAGAAGAGAAGGAAGATATTGGTGCTATTAATAGGCTTCCTCTGTTGACCCCTGCTGCTGCTGGTGGTGGAGTGAAGACTCTCAGGGAAGGTTCTGGTTCGAGTGGATCCAGAACCAGCTCCAACAACAGGCCGGTTTCCACGTCTTCTCCTCCGGCGGCTGCACACCGCACTGCCATGATGCCTCTTCAGCCTCAGCAGACTGCTAGGAAACAGAGGAGGTGCTGGTCCCCGGAGCTGCACCGACGATTTGTCAATGCGTTGCAAAAGCTTGGTGGTTCTCAAGTGGCAACACCAAAGCAGATTAGAGAACTCATGCAGGTTGATGGACTCACAAACGATGAAGTGAAGAGCCATTTACAAAAATACCGGCTTCATACAAGAAGAGTTCCATCTGGAAGTGGTAACCATAGTCATAATCATAATCAATCTGTTGTAGTTCTTGGAGGATTGTGGATGTCACAAGGGCAAGATCAGTGCAATGACTCATCAAAGGGTAGTAGCTCTGGTTCCGGTTCGCCGCAGAGCCCCCTGCATTTAGCCACCAGATCTCGGGGAGGAACGTCCCCGGCTGAGGCTGATGACAGCATGGAAGATGATGAAGATGCAAAATCAGAAAGCTATAGCTGGAAAAGCCACACTCATCACAAACAAGTAAAAGTTGTTGATGTATAG 1398 0.4578 MGSVPAELSLDIRPPTPPPPPPPSTPSFIPKTITDFLSALSTTGITASEKQSRINXFLSHLEDEYNKIHAFKRELPLSMLLLSDAIVALKEELEKCSEGERKSEPVLEVFIPLKREFDHSEDDEEHNNNNNNDNNNNNNNIRQEKECRDKMSWMSSVQLWNASSSTTLNNNNNNNAFDNNHKHHHQNHHHKFGTKKNQECVVENPFQSHSNVRNNGGRGFMPFTSYTSCSVPVTTVALSATKEEKEDIGAINRLPLLTPAAAGGGVKTLREGSGSSGSRTSSNNRPVSTSSPPAAAHRTAMMPLQPQQTARKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSGSGNHSHNHNQSVVVLGGLWMSQGQDQCNDSSKGSSSGSGSPQSPLHLATRSRGGTSPAEADDSMEDDEDAKSESYSWKSHTHHKQVKVVDV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1259 465 MobiDBLite consensus disorder prediction 1 30 - -
Amo10g1259 465 Gene3D - 311 369 - -
Amo10g1259 465 SUPERFAMILY Homeodomain-like 309 370 IPR009057 -
Amo10g1259 465 MobiDBLite consensus disorder prediction 271 295 - -
Amo10g1259 465 MobiDBLite consensus disorder prediction 262 315 - -
Amo10g1259 465 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 25 456 IPR044787 GO:0003700|GO:0006355
Amo10g1259 465 MobiDBLite consensus disorder prediction 164 188 - -
Amo10g1259 465 MobiDBLite consensus disorder prediction 372 424 - -
Amo10g1259 465 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 312 367 IPR006447 GO:0003677
Amo10g1259 465 MobiDBLite consensus disorder prediction 360 465 - -
Amo10g1259 465 MobiDBLite consensus disorder prediction 444 465 - -
Amo10g1259 465 Pfam Myb-like DNA-binding domain 314 365 IPR001005 -
Amo10g1259 465 MobiDBLite consensus disorder prediction 118 146 - -
Amo10g1259 465 PANTHER TRANSCRIPTION FACTOR HHO6 25 456 - -
Amo10g1259 465 MobiDBLite consensus disorder prediction 11 28 - -
Amo10g1259 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 309 369 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1259 Amo-Chr10 27926513 27929795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1259 6 394 G2-like Transcription Factor Family AT2G03500 35.338 2.07e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo10g1259 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1259 - - adu:107470076 794.653