Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1237 ATGGATCATAGAAGCGGAGGAGGAGGAATGGATATACCCATAATGCATGAGAGTGATCGCTATGAGTTAGTTAGAGATATTGGTTCTGGAAACTTCGGAGTCGCCAGGCTCATGAGGGATAAGCACACCGACCAACTTGTTGCCGTTAAGTATATTGAGAGGGGTGAAAAGATCGATGAAAATGTACAGAGGGAAATTATAAATCACAGATCACTAAGGCATCCCAATATTGTGAGGTTCAAGGAGGTTATACTGACCCCAACACATTTGGCTATTGTCATGGAATATGCCTCGGGAGGAGAGCTATTTGAACGAATATGCAATGCAGGGCGCTTTAGTGAGGACGAGGCACGTTTCTTCTTCCAACAACTTATATCTGGGGTTAGCTACTGTCATGCAATGCAAGTTTGTCATCGTGATTTGAAGTTGGAAAATACATTGTTGGATGGTAGTCCAGCTCCTCGCTTGAAGATTTGTGATTTTGGTTATTCAAAGTCTTCAGTGCTACATTCACAACCAAAATCTACAGTTGGCACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTAACCTTATATGTGATGTTGGTTGGTGCTTATCCATTTGAGGATCCAGAGGAACCTAAAAATTTCCGCAAAACAATACATGTAAGACATTGCTTCCTCCTTTCTTTTCTTTTCTTTTCTTTTCTTTTTAATTATTTGATGGATGGAACTTGTTTCTCTAAATGGTATACTAATATTGAATGTTGGTTGCAGAGGATTTTGAATGTCCAATACTCAATTCCTGACTATGTTCATATATCTCCTGAGTGCCGCCATTTGATCTCAAGGATTTTTGTTGCTGATCCTGCACAGAGAATAAGTATACCGGAGATCAAAAACCATGAATGGTTCTTGAAGAATCTACCAGCTGATCTCATGGATGGGGACACAATGAGCAACCAGTATGAGGAGCCTGATCAACCGACACAAAGCATTGAAGAGATCATGCAGATAATATCCGAGGCCATGATTCCTCCGGCCGGAAGCCAGTCCCTCAACCAGTACCTCACCGGAAGCTTGGACATCGACGATGACATGGATGAGGATCTAGACAGTGATCCTGACCTTGACCTTGATAGCAGTGGAGAAATTGTCTATGCTATGTAA 1197 0.4202 MDHRSGGGGMDIPIMHESDRYELVRDIGSGNFGVARLMRDKHTDQLVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHVRHCFLLSFLFFSFLFNYLMDGTCFSKWYTNIECWLQRILNVQYSIPDYVHISPECRHLISRIFVADPAQRISIPEIKNHEWFLKNLPADLMDGDTMSNQYEEPDQPTQSIEEIMQIISEAMIPPAGSQSLNQYLTGSLDIDDDMDEDLDSDPDLDLDSSGEIVYAM* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1237 398 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 12 230 - -
Amo10g1237 398 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 264 393 - -
Amo10g1237 398 Gene3D Transferase(Phosphotransferase) domain 1 97 322 - -
Amo10g1237 398 SMART serkin_6 21 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1237 398 Pfam Protein kinase domain 21 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1237 398 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Amo10g1237 398 ProSiteProfiles Protein kinase domain profile. 21 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g1237 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Amo10g1237 398 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Amo10g1237 398 SUPERFAMILY Protein kinase-like (PK-like) 14 342 IPR011009 -
Amo10g1237 398 PANTHER SERINE/THREONINE KINASE 264 393 - -
Amo10g1237 398 PANTHER SERINE/THREONINE KINASE 12 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1237 Amo-Chr10 27233050 27236275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1237 14 339 CBL-interacting serine-threonine protein kinases AT4G24400 37.059 3.81e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Amo10g1237 Pkinase 4.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1237 K14498 - qsu:112032862 632.098