Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1227 ATGTGTTGCAATAATCAAAGCTGGTACCAGGAGGTATCAAAGCTAAAGGCAAAGTATGAGTCTCTACAAAGGACTCAGAGGCACTTGCTTGGGGAAGATCTTGGACCATTGAGCATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGTTCTTTAGCACAGGCCAGACAGAGGAAGGGTTATGCATTTTTATTCACAATCATCGAGTACATGATTATTAAGGAGACTCCTGTTCTAGTTCAAGATTCTGCAAAGATTAAAGAAGCACCACCAGCCCCAAATCGAAAGTTACTGGAACTAGATCAGATGGAGGTGAGCTTCACTTGTGAATTTGTTACTTGA 345 0.4174 MCCNNQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGSLAQARQRKGYAFLFTIIEYMIIKETPVLVQDSAKIKEAPPAPNRKLLELDQMEVSFTCEFVT* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1227 114 ProSiteProfiles K-box domain profile. 5 93 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g1227 114 Coils Coil 39 59 - -
Amo10g1227 114 Coils Coil 5 25 - -
Amo10g1227 114 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL6 ISOFORM X1 5 72 - -
Amo10g1227 114 PANTHER MADS BOX PROTEIN 5 72 - -
Amo10g1227 114 Pfam K-box region 5 73 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1227 Amo-Chr10 27129242 27131148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1227 6 60 MADS-box Gene Family AT2G45650 69.091 1.70e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1227 K09264 - vvi:100232868 112.849