Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1183 ATGGATACTAGTTTTGTCCTCATCCACGACAAAATGGACGAGGACATCAGAATCCATGGCGGTCGCAACAAGCCCAAAGGCGAGGCGAAAGGGGAGGACGGCAACAACGACGAAGACAAAGACGACCAAGAAGAAGACAACAACAATAGTGTGACGGTTGCACTTCACATAGGGTTACCAAACCCTAGTGCTGCTGAGCTGGCAACAATTACCTCCATAGAATCTTCTTCTAACAATAATAACAATAGCAATTCATCATCAACGGAGAAAGAACAACATCATCATGAAGAAGAAGGAGAAGGGAGTGAAGAGTCGCAGTGTCATAAAGGGTTCTTGGGTACAAGACTCAACAAGGGACAGTACTGGATCCCAACCCCAACCCAGATTCTCATTGGTCCAACTCAATTTTCTTGCCCTGTTTGCTACAAAACTTTCAACAGATACAACAATATGCAAATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGAATCTCTAAGAGGAACTCAACCAACAGGTATGCTTAGGCTTCCATGTTATTGCTGTGCACCAGGTTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGATTTTAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCCGGAAATGCGGCAAGGCCTTCGCCGTCCGAGGCGATTGGCGGACGCATGAGAAAAATTGTGGCAAACTTTGGTATTGCATCTGTGGATCCGATTTTAAACACAAGAGGTCGCTTAAGGATCATATAAAGGCTTTTGGGAGCGGACACGCCGCGTTTGGGATCCACGGCGGATTATTTGAAGAGGAGGAGGAGCCGGCATCTGAAGTCGAACAAGATAATGACGAACTCAACCAGTAA 903 0.4607 MDTSFVLIHDKMDEDIRIHGGRNKPKGEAKGEDGNNDEDKDDQEEDNNNSVTVALHIGLPNPSAAELATITSIESSSNNNNNSNSSSTEKEQHHHEEEGEGSEESQCHKGFLGTRLNKGQYWIPTPTQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAFGIHGGLFEEEEEPASEVEQDNDELNQ* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1183 300 SUPERFAMILY beta-beta-alpha zinc fingers 201 240 IPR036236 -
Amo10g1183 300 Gene3D Classic Zinc Finger 197 273 - -
Amo10g1183 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Amo10g1183 300 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 29 297 - -
Amo10g1183 300 Gene3D Classic Zinc Finger 135 158 - -
Amo10g1183 300 MobiDBLite consensus disorder prediction 9 36 - -
Amo10g1183 300 PANTHER ZINC FINGER PROTEIN WIP2 29 297 IPR043584 GO:0003700|GO:0010468
Amo10g1183 300 MobiDBLite consensus disorder prediction 9 53 - -
Amo10g1183 300 MobiDBLite consensus disorder prediction 88 105 - -
Amo10g1183 300 MobiDBLite consensus disorder prediction 74 107 - -
Amo10g1183 300 Coils Coil 288 300 - -
Amo10g1183 300 SUPERFAMILY beta-beta-alpha zinc fingers 105 158 IPR036236 -
Amo10g1183 300 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Amo10g1183 300 Pfam Zinc finger, C2H2 type 136 155 IPR013087 -
Amo10g1183 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 240 IPR013087 -
Amo10g1183 300 SMART c2h2final6 136 158 IPR013087 -
Amo10g1183 300 SMART c2h2final6 220 240 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1183 Amo-Chr10 25783569 25787706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1183 51 296 C2H2 Transcription Factor Family AT3G57670 75.097 2.10e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo10g1183 zf-C2H2 0.014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1183 - - aip:107628393 562.377