Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1182 ATGGTGGACCATTTCATTGTTTGCATTGATCGTATAATACCTTCCACCTCTTGTTTACCATCACCGCCGCACCATGATCATGTTCCAGAACAAGAACAAGCCTGCTCCTCCTCCAATTCTTCCTCTTCAAATTACAAGCGTCACGATGATGATGTGGTTGTGGAGTGTAGAATATGTCAGGAGGAAGATCAAATCCATTTCATGGAGGCCCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGCATCCAAAAATGGTGCAACAAGAAAGGAAATACAATATGTGAAATCTGCAATCAGATATTTTCACCAAACTATTCTCTTCCAATAGTCAGAAGCAACGACATTATAGCAATTGATCTAAGCAGTGTAGCTGTTGTATTTATCTTGTTTCTATATACCAGGCAAGAATGGGAGCGTAATACAGATCTTCGTGTTGCTCTAACATCAGCGGAGAACCATTTAATGCAAAGAGAATATGAAGAATATGCTATCACACAAACCAGTAGCATCGCTTGCGTCCGCTGTGCCACTCTCATTTTGCTGATAGTCTTGCTTGTACGCCAAGCCTTAATGGTTACAACGAACTCTGCAACCAGGCGCGATTCATCAAGAATGTTTGATGCACAGAACAGCTTCAAGCTCCGAAATGGTAAAGTGAGATTAAGTTTGAGATGTCACTTCTTCAATTTGCCAGCATTCTTTTGCCGTGTTGCGCAATGGCACGTTCCTGGTATCTCATACAGAACAGAAGAAGACAGGGTTAAGCAAGGGAAGAGTACACATGCTGATAATTTCCTTTTCTTTTTTTGGGTCAACATTTTCCTTGGTTATCAGAGAAAAATTGTAGAAGTTACATACAGAAGCTACATGGCTTTTTTTAGAACAATTGTTGTTCTTGATGGCAATGCCAGAGAGGATCAAGCAGGGTGGCCTTCTCTTCATGGCTTGATGGCAATGCCGATGGGATGTTTGGGTGGGTTAATTATTTTAGTTAAGAAGTTTTTCACATTGCAACTCTGGTTTAGTGGCTTGGGTGGTAGACTGATAGGGGTGGCAATGGATTGA 1077 0.415 MVDHFIVCIDRIIPSTSCLPSPPHHDHVPEQEQACSSSNSSSSNYKRHDDDVVVECRICQEEDQIHFMEAPCSCNGTLKFAHRKCIQKWCNKKGNTICEICNQIFSPNYSLPIVRSNDIIAIDLSSVAVVFILFLYTRQEWERNTDLRVALTSAENHLMQREYEEYAITQTSSIACVRCATLILLIVLLVRQALMVTTNSATRRDSSRMFDAQNSFKLRNGKVRLSLRCHFFNLPAFFCRVAQWHVPGISYRTEEDRVKQGKSTHADNFLFFFWVNIFLGYQRKIVEVTYRSYMAFFRTIVVLDGNAREDQAGWPSLHGLMAMPMGCLGGLIILVKKFFTLQLWFSGLGGRLIGVAMD* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1182 358 MobiDBLite consensus disorder prediction 20 46 - -
Amo10g1182 358 CDD RING_CH-C4HC3_MARCH 56 102 - -
Amo10g1182 358 PANTHER OS01G0894600 PROTEIN 1 215 - -
Amo10g1182 358 ProSiteProfiles Zinc finger RING-CH-type profile. 48 108 IPR011016 GO:0008270
Amo10g1182 358 Pfam RING-variant domain 56 101 IPR011016 GO:0008270
Amo10g1182 358 Pfam Protein of unknown function (DUF3675) 121 210 IPR022143 -
Amo10g1182 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 107 IPR013083 -
Amo10g1182 358 SMART ringv_2 55 102 IPR011016 GO:0008270
Amo10g1182 358 SUPERFAMILY RING/U-box 54 105 - -
Amo10g1182 358 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 215 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1182 Amo-Chr10 25592104 25595480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1182 49 104 C3H Transcription Factor Family AT2G37950 38.095 1.14e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1182 - - ahf:112786832 345.125