Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1177 ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTTCCAAGAGAAGAGGGGGTAGATGTTAGAAAGATGATGGGACACAAAAGGAGCCCATGTTCTGTTGACCAAAGCAGTTATACTTCTATTGAATCTAAAAGGCAAAAGGCTAATGATTTATCAATCACCGCAAAGGAGAGGAAGGAGAAGCTTAGTGAACGAATCGTTGCATTGCAGCAGCTTGTTTCACCATATGGCAAGACAGATACATCTTCTGTCTTAGAGGAAGCAATGCAATACATAGGTTTCCTTCATAGACAAGTTAAGCTTCTTAGTGCCCCGTACCTTGAGAGTTCGGCCGCAACCAAGGATCCGGGTCTGGAGCCATGCAGCCTGAGGAGCAGAGGGTTATGCCTTGTTCCTGTCTCACTAACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAGACCACCACTTCGCCGCCGAAATTCGAGAAGGAGGCCGCCCAATTTCAGTCATAA 513 0.4639 MIASSFCNADSMFPREEGVDVRKMMGHKRSPCSVDQSSYTSIESKRQKANDLSITAKERKEKLSERIVALQQLVSPYGKTDTSSVLEEAMQYIGFLHRQVKLLSAPYLESSAATKDPGLEPCSLRSRGLCLVPVSLTIGVAESNGADIWAPIKTTTSPPKFEKEAAQFQS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1177 170 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 151 - -
Amo10g1177 170 Gene3D - 42 115 IPR036638 GO:0046983
Amo10g1177 170 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 15 151 - -
Amo10g1177 170 CDD bHLH_AtbHLH_like 53 104 IPR045239 -
Amo10g1177 170 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Amo10g1177 170 SMART finulus 53 102 IPR011598 GO:0046983
Amo10g1177 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1177 Amo-Chr10 25478286 25487362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1177 24 161 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 58.696 1.20e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1177 - - ahf:112715472 303.138