Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1164 TTGCTCCTTTCGTCGTCACACGAGCTCTCTCGGTCGTGCTCTTGCCTTACGAGCTCCCTCCACCGCCGCTCTCGCGCTGCTTCTTCTCTCCTCGCCGGAGGTTTGTCATCGTCTCTTCTCGTCGCTGTTAGTTCAGGTAGCCTCCGCCTCCTTCTCATCCCTATCCCTAACCCTTCCATTGTGATTCTGGGAGATGATAGTAACACAACTCCAAAGACAACAACGCGTTTAATTGATTCTGATCTTGCCGTTGCTCTTGTCTTTCAACAACAGCACTATCATCATGCCTTTGATTTAACCTCAATTGTGGACTCCAATGATCAAACTAAGCTTAAACATGAGGATCAGAAGACTCTTCGTAGACTGGCTCAGAATTGTGAGGCTGCTAAGAAGAGTCGATTGAGGAAGAAGGCATATGTGCAGCAATTGGAGAATAGTAGAGTTAGGCTTGCACAATTAGAGCAAGAACTTCAGTCATCCAATTTCAAGGTACATAGAAGGCCAAGAATGGGAGGCCATAGATTCATAGGAATGAGAACTCAACATCAAAAGCTGACTAGAAAATGTGATATTCGCGGCAACATTTTCTTGTGGGCATTTAAGGGAGTTATGGATCAGAACCCTTCCCCATTTGGGCACATTTTGCTTGATCAGAGTTTTAGCCCCAGCTGTATAATGCATCCAGATACTTACCTAAATAAGGTTCTCGTTGGGAGCGAGCAAGGTCCTATGCAGCTTTGGAACATTAGCACAAAGAAAAAGATATTTGAGTTTAAGGGATGGGATTCACCGATCACCTGTTGTGTTTCCTCCCCTGCTCTAGATGTCGTTGCAGTTGGGTGTGCAGATGGAAGCATTCATGTTCATAACATTCATTATGATAAAGAATTGGTTACATTTACACATTCTACACGAGGTTCTGTCACTGCCTTATCTTTCTGCACTGATGGGAAACCCCTTCTAGCCTCTGGAGGTTCATCAGGTGTCATAAGCGTATGGAATCTGGAAAAGAAAAGGCTCCAGCCAGTTGTAAGAGAGGCTCATGATAGTCCAGTGCTTATGAGTTCTTCAGCAGATAATTCTATTAAGAATAATCTTCATGAACTCTGGACCCTTCTCAATTTTCTTCTGCCTGAAACTTTTAGCTCTGCTGAAACTTTTGATGAATGGTTCCAAATATCAGGTAAAATGGTTCTATTGGATAAGTTACTTCCTAAATTAAAAGAGCGTGATTCCTGGGTCCTGATATTTTTACAGCAAGGCCATGGAGCAAGTGAGCAAGAACCAGGCATTAGTAGATGCTATTGGAGAACCAATAGTTAA 1323 0.4331 LLLSSSHELSRSCSCLTSSLHRRSRAASSLLAGGLSSSLLVAVSSGSLRLLLIPIPNPSIVILGDDSNTTPKTTTRLIDSDLAVALVFQQQHYHHAFDLTSIVDSNDQTKLKHEDQKTLRRLAQNCEAAKKSRLRKKAYVQQLENSRVRLAQLEQELQSSNFKVHRRPRMGGHRFIGMRTQHQKLTRKCDIRGNIFLWAFKGVMDQNPSPFGHILLDQSFSPSCIMHPDTYLNKVLVGSEQGPMQLWNISTKKKIFEFKGWDSPITCCVSSPALDVVAVGCADGSIHVHNIHYDKELVTFTHSTRGSVTALSFCTDGKPLLASGGSSGVISVWNLEKKRLQPVVREAHDSPVLMSSSADNSIKNNLHELWTLLNFLLPETFSSAETFDEWFQISGKMVLLDKLLPKLKERDSWVLIFLQQGHGASEQEPGISRCYWRTNS* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1164 440 SMART WD40_4 294 334 IPR001680 GO:0005515
Amo10g1164 440 SMART WD40_4 251 290 IPR001680 GO:0005515
Amo10g1164 440 Gene3D - 137 372 IPR015943 GO:0005515
Amo10g1164 440 PANTHER WD REPEAT-CONTAINING PROTEIN 36 189 363 - -
Amo10g1164 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 343 IPR001680 GO:0005515
Amo10g1164 440 SUPERFAMILY Leucine zipper domain 118 164 IPR046347 GO:0003700|GO:0006355
Amo10g1164 440 SUPERFAMILY WD40 repeat-like 193 362 IPR036322 GO:0005515
Amo10g1164 440 Coils Coil 136 163 - -
Amo10g1164 440 Pfam bZIP transcription factor 116 157 IPR004827 GO:0003700|GO:0006355
Amo10g1164 440 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 120 135 IPR004827 GO:0003700|GO:0006355
Amo10g1164 440 SMART brlzneu 113 191 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1164 Amo-Chr10 25000029 25004295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1164 100 160 bZIP Transcription Factor Family AT5G06950 73.770 1.44e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo10g1164 bZIP_1 1.5e-06 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1164 K14554 - adu:107469594 556.984