Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1148 ATGCCTCCTCTATTTGATTCTATCTCTAAGATCCACCCTCCAAGGGAGGCATGGAGACTTAAAGTTAGGGTACTAAGAACTTGGATTGTTCCTTCTTTTGGAAATTATGAAGTTACAAATTCAATGGAAATTGTTCTTGTTGATGGAGATTCTAACAAAATACAAGCAACTGTTAAGAAGCAGCTCATAAATAGGTTTAAAGAGAGTATTATTGAGGGTCAAACATACTGGATGTCATATTTTAGTGTTGTTCCAAACCAAGGCAATTATAGGGCAGCAGAACATGAGTTTAAGTTGGCTTTTCTTAATCGTACAACTGTTATTCCTGTCTCTGACGATGATATCCCAAAGACATGTTTCGATTTCTGTCCCTTTGATGAGCTCTTGAAAATGACTGAAGATTACATTTACTTAGTTGATGTTATTGGTTTGCTGACTTTTGTTGGTGAAGAGAAAGAGTATGTGAAAGATGCGAAAGTGATGAAGATGATCGTTCTTGAGTTATCTTCAAAAGAGTTGACAATACGCTGTACTCTGTTTGGAGAGTATGTGGATGAAGTGCATCGTTTCTTAGGTTCTGGCTATATGGAGCAGCCAGTTGTTGTGATCCAACTTGCCAAAGTTAAATTCTTTAGGGGACAAGTTGGTCTCCAAAATGTTATGCATGCTACTCGGCTGTTCTTTAATCTAGATTTGTCTGAAGTAGTTGATTTCAAAAATAGGTTATTGGATAGTATCAATGGAACACAGTCATTGTTTATTGCTAATGAGGGCAAGGGTGTTTCATTGGAAGATGATTTTATGCGGCTTACTAGAAGATGCACTATTAACGAACTTCATGATAACAACGAAGTTTATTGGGAGGGGTCTTTTGTGGTTTTTGGTTTTGTGAGATCTATTGTGGATGAGGGACCTTCGTGGTATTCAACTTGTATTTGTGGGAAATATAGGATCAAAATAGCTGTTGAGGATGACAATGGACATGGCGTATTTGTGTTATTCGATCGTGAAGCTGCTTACTTATTGAAAAAATCATGTGCTGATCTGTTTGGAGAAGTTCAGAAGGATGCAAATCAATTGGTGGGTAAAAAATTGCTCCTTAAGATAGATACCAAGAGTGTTGGTACAGACAAGTATTTTGAAACTTTCCGTGTGAGAAGAGTTTGTGATGATGCTGCTATTATTTCCATGTTTGAGTTGCCTAACTATGATGCCAATGATGAGCGTACTCCATTGAAGGATGGTAAGTTGGGAAAGATCCCTTCAAGTGAGGATGAACATATTGTTGACAAGAGGGAGCCCTGTGAGGTGCTGGATGAGGGTGCTAAAGTTCCTGGATTGGATGATATAAGTACTGAAATTGATATTGTAAGAGAGGCAGGGAAAAGTGTTGGTGATAGTGTACTTGTTGATGGGAAGTGCAGTCTTGAATTTTCCTCTATTGTTTATCGTATAAAAGGCTTATTTGTTCCTTTACTTGAATTTTTCAATGTGTCTTTTGCATTTGTGCTGAGAAGTACCTTACATGCTTGCGAATAA 1539 0.3769 MPPLFDSISKIHPPREAWRLKVRVLRTWIVPSFGNYEVTNSMEIVLVDGDSNKIQATVKKQLINRFKESIIEGQTYWMSYFSVVPNQGNYRAAEHEFKLAFLNRTTVIPVSDDDIPKTCFDFCPFDELLKMTEDYIYLVDVIGLLTFVGEEKEYVKDAKVMKMIVLELSSKELTIRCTLFGEYVDEVHRFLGSGYMEQPVVVIQLAKVKFFRGQVGLQNVMHATRLFFNLDLSEVVDFKNRLLDSINGTQSLFIANEGKGVSLEDDFMRLTRRCTINELHDNNEVYWEGSFVVFGFVRSIVDEGPSWYSTCICGKYRIKIAVEDDNGHGVFVLFDREAAYLLKKSCADLFGEVQKDANQLVGKKLLLKIDTKSVGTDKYFETFRVRRVCDDAAIISMFELPNYDANDERTPLKDGKLGKIPSSEDEHIVDKREPCEVLDEGAKVPGLDDISTEIDIVREAGKSVGDSVLVDGKCSLEFSSIVYRIKGLFVPLLEFFNVSFAFVLRSTLHACE* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1148 512 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
Amo10g1148 512 Gene3D - 6 113 IPR012340 -
Amo10g1148 512 PANTHER REPLICATION FACTOR A 1, RFA1 22 350 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo10g1148 512 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Amo10g1148 512 CDD RPA1_DBD_A_like 19 107 - -
Amo10g1148 512 CDD RPA1_DBD_B_like 140 242 - -
Amo10g1148 512 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Amo10g1148 512 Gene3D - 312 399 IPR012340 -
Amo10g1148 512 Gene3D - 114 248 IPR012340 -
Amo10g1148 512 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1148 Amo-Chr10 23984894 23987882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1148 8 235 Core DNA Replication Machinery Family AT2G06510 26.778 4.14e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1148 - - aip:107647213 646.736