Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1055 ATGGCATCCAGAGCCACTGGAACACTGATTTGTTCTTGCATGATATGGCTCTTCCTTCTCTGCGCAACCATCGCGTTCCTTCAGCTCAAGTTGGTGGATGACTCAGCACATCGAGCTTCCTCTAATAGAAAAATAACCACTCATCACTCCGCAACTGATGACCTAGATGGAGAAAATTTGGAGGGTGTGACGCATGAGGTGTATTTTGATGTTCAGATTGGTGGAAAATTAGCCGGTCGCATAGTCATGGGCCTTTTTGGGAAGACAGTTCCGAAAACTGTAGAAAACTTCAGAGCGCTTTGCACCGGAGAGAAGGGGGTTGGAAAAAGTGGGAAGCCTCTTCACTATAAAGGGAGCGTATTCCATCGGATTATACCAAGCTTTATGGTCCAAGGTGGTGATTTCACACGAGGTGATGGACGAGGTGGTGAATCGATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGGTGAAGCATGATGGGCCAGGGTACTTGTCAATGGCGAATTCCGGGCAAGATACCAATGGCTCGCAGTTTTTCATCACAACAGTAAGAACCGGCTGGTTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCAGGAATAGACATTTTGTACAAGATTGAAGCTGAAGGAAGTGAAAGTGGCACCCCAAAAAGTAAGGTTGTCATAATAGACAGTGGAGAATTAACTTCATGA 705 0.4539 MASRATGTLICSCMIWLFLLCATIAFLQLKLVDDSAHRASSNRKITTHHSATDDLDGENLEGVTHEVYFDVQIGGKLAGRIVMGLFGKTVPKTVENFRALCTGEKGVGKSGKPLHYKGSVFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKVKHDGPGYLSMANSGQDTNGSQFFITTVRTGWLDGRHVVFGKVLSGIDILYKIEAEGSESGTPKSKVVIIDSGELTS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1055 234 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 41 232 - -
Amo10g1055 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Amo10g1055 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Amo10g1055 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 179 IPR002130 GO:0000413|GO:0003755
Amo10g1055 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 191 IPR002130 GO:0000413|GO:0003755
Amo10g1055 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 207 IPR002130 GO:0000413|GO:0003755
Amo10g1055 234 Gene3D - 52 234 IPR029000 -
Amo10g1055 234 CDD cyclophilin_ABH_like 67 230 - -
Amo10g1055 234 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 68 231 IPR002130 GO:0000413|GO:0003755
Amo10g1055 234 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 41 232 - -
Amo10g1055 234 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 69 229 IPR002130 GO:0000413|GO:0003755
Amo10g1055 234 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 116 133 IPR020892 GO:0003755|GO:0006457
Amo10g1055 234 SUPERFAMILY Cyclophilin-like 63 232 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1055 Amo-Chr10 20693075 20697218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1055 79 229 U-box Gene Family AT5G67530 43.137 2.38e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1055 K01802 - gmx:100798499 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1515 20 36923729 36927866 Amo10g1055 10 20693075 20697218 hybridization