Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1049 ATGCATGACTCAGATGGTGTGGACAAGTTGTTAATGTTGTTTGGAACCATCGAAAGCATTGGTGATGGATTGCAGAACCCTCTTATGATGTATATTCTTAGTGATGTCATCAATGCTTATGGAGATAAGAATTCCAAATTGGGTATGCATGATGTGAACAAGTATGCATTGAGGCTTTTATTAGTTGCAATTGGTGTTGGACTTTCAGCTTTTGTAGAAGGAATGTGTTGGGCAAGAACTGCAGAGAGACAGGCTTCAAGAATGAAAATGGAATATTTGAAATCAGTGCTGAGACAAGAAATTGGATTCTTTGATAGCCAGACAGCTGGTACTTCAACAACTTACCAAGTTGTCTCACTCATCTCCTCAGATGCCAATACCATCCAAGTTGCCTTGTGTGAGAAGGTTTTACTATTCACTTCTGATCTATTATGCTTTCCCCAAACTAAACTTGCTATCACTGCTATTTATATCATCACTTATATTTAA 489 0.3783 MHDSDGVDKLLMLFGTIESIGDGLQNPLMMYILSDVINAYGDKNSKLGMHDVNKYALRLLLVAIGVGLSAFVEGMCWARTAERQASRMKMEYLKSVLRQEIGFFDSQTAGTSTTYQVVSLISSDANTIQVALCEKVLLFTSDLLCFPQTKLAITAIYIITYI* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1049 162 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 26 144 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g1049 162 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 7 136 IPR039421 -
Amo10g1049 162 SUPERFAMILY ABC transporter transmembrane region 8 146 IPR036640 GO:0005524|GO:0016021
Amo10g1049 162 Pfam ABC transporter transmembrane region 13 146 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g1049 162 Gene3D ABC transporter type 1, transmembrane domain 1 159 IPR036640 GO:0005524|GO:0016021
Amo10g1049 162 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 7 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1049 Amo-Chr10 20541090 20546417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1049 4 146 Calmodulin-binding Proteins AT2G36910 33.103 1.69e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1049 K05658 - adu:107469479 256.914