Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1043 GCCTCCATCTTCAAACCCTACTTCGAGTTCACCGGCCGCCACTCCTCCTCCGCCACCACCGCCACCCCGGCCGAAGTGTCAAAGATCCAATCCTTCCTTACTTCCTCATCCTCCGGCGCACTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCTCAGACCCAACATGGTCCTGCTCCTCGCTCTGCTTCGCCCTCTTCCACCTCCATTGTATCCAATCATGGGCCCGCCAAGCCTCCAATCTCGCTGCCGCACGCGCCGCCACGCGCCTCCCTATCACAGAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATCACGCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGCGGTGAGATTTGTGGGAGGCCATTGAAGCACAACTGTGGTCACCATTGCCTTCTTTTATGCCACCCTGGACCCTGCCCGTCCTGCCCAAAACTCGTGAAAGTTAGTTGCTTTTGTACCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAGTTCTCGTGTGGGAAAGTTTGTGGGAAGCTTCTGGATTGTGGGGTTCATGGTTGTGCTGAGATTTGTCATGAGGGTCAATGCCCTCCCTGCCGGGCACGCAGTGTGTACCAGTGCCGGTGTGGTAAGAAGAAGGAAGAGAGGGAGTGCTGTAACCGTGTTTTCGGGTGTGGCGAGCCTTGTGAGAAGAGGCTTGGATGTGGGAGGCATGTGTGTGAGAGAGGTTGCCATGTTGGGGAGTGTGGAGACTGCCCTTTGCAAGGGAAGAGGGCATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTACTGTGCCCTTATGTGGGGCTACTTGTGATAAGATGCTTAGTTGTAGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGTGCATGTGTTGAGACTTGTAGGACTGTTGTGAAGAAGTCTTGTCGATGCGGCAGCCTCAGGAAAGATGTTCCTTGCTATCAAGATTTGTGGTGTGAAAGGAAGTGCCAGAGGATGCGGGACTGTGGCCGGCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCATGCTCAGAGGTCTGTGACAGGCGGCTTAGATGTAAAAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCCTGTGCTCCTTGCCCAATAATGGTCACCATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCATGCCCTATTGCTCCTTTATGCCATCATGCACCAAAGCTCAAGCCACACAAATGCCATTATGGAGCCTGTCCTCCTTGTCGGCTCCCTTGTGCAGAAGAGTACTCTTGTGGCCATGCTTGCAAATTAAGGTGTCATGATGCTAAACCTCCGCCTAATCGGGAGTTCACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAATGTACACCTGGTACTCCATGCCCTCCTTGCCCTGAACTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAACGGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGAAAACTTATGTGGAAATCCTCTACCGTGCGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAATTCGGCCTCCACAAACCGGCTACAGAAAAGTGAGCCTTGTGAAGATTGTTCTCTTCCTTGTGATAAGGAAAGAGAACCTAAATGTCAGCATTGTTGCCCTCGTCAATGCCATCCTGGAGACTGTCCTCCATGCAAAGCGCTGATCAAGCGGTCTTGTCATTGTGGCTCAATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCAGCTAAGGATCAAGAGAAAGTCCGTTCATGTGGTGGGCTGTGTCATAGGAAGTTAGCAAATTGTACCCATCTATGCCCCGAGACGTGCCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCATCGTTCGTTGCAAATGCCAAACACTGAAAAGGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCACAGTGCTGGTTCCCACCCAAAGGATATTACCAAAAATCAATTTGGAATTGGCCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGTCGGAATTACATCTACGTAAATCTCAAGTTACAGAGGTAAAAGAGACAGATAATGAAAAACTGGCTCCGAAGCGACGAAAAAGGCAGAAACGAGTACAAGAATCTAAGGAAGCAACAAAAATACAGAAAATTATTTCTACAACAAAGAAGCTCCTTCTGTACCTTTTTATTTTGATCGTACTTGTTACTGCTACATATTATGGATACAAGGGACTTCTGTGGCTCAATGATTGGATGAATGAAGTTGATGAACGAAGACAAAGACATCCTAGGATCAGATGA 2520 0.4885 ASIFKPYFEFTGRHSSSATTATPAEVSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFALFHLHCIQSWARQASNLAAARAATRLPITEQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVSCFCTKIEDVRRCGFKEFSCGKVCGKLLDCGVHGCAEICHEGQCPPCRARSVYQCRCGKKKEERECCNRVFGCGEPCEKRLGCGRHVCERGCHVGECGDCPLQGKRACPCGKRVYEGMPCDVTVPLCGATCDKMLSCRYHRCPERCHRGACVETCRTVVKKSCRCGSLRKDVPCYQDLWCERKCQRMRDCGRHACKRKCCDGDCPPCSEVCDRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCHHAPKLKPHKCHYGACPPCRLPCAEEYSCGHACKLRCHDAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGTERMMVCSDKSQFACENLCGNPLPCGNHYCTKTCHALENSASTNRLQKSEPCEDCSLPCDKEREPKCQHCCPRQCHPGDCPPCKALIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLANCTHLCPETCHPGECPNPEKCSKKVIVRCKCQTLKREWPCHDVQAAYHSAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVESELHLRKSQVTEVKETDNEKLAPKRRKRQKRVQESKEATKIQKIISTTKKLLLYLFILIVLVTATYYGYKGLLWLNDWMNEVDERRQRHPRIR* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1043 839 SMART znfxneu3 394 413 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 314 334 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 367 386 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 667 688 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 260 279 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 604 622 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 155 173 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 562 594 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 480 525 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 207 226 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 SMART znfxneu3 451 472 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 ProSitePatterns Zinc finger PHD-type signature. 43 109 IPR019786 -
Amo10g1043 839 SUPERFAMILY RING/U-box 41 115 - -
Amo10g1043 839 CDD NF-X1-zinc-finger 143 191 - -
Amo10g1043 839 CDD NF-X1-zinc-finger 384 432 - -
Amo10g1043 839 CDD NF-X1-zinc-finger 304 353 - -
Amo10g1043 839 Pfam NF-X1 type zinc finger 367 385 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 605 621 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 562 572 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 394 412 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 316 333 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 668 686 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 207 225 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 480 490 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 260 278 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 461 471 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 Pfam NF-X1 type zinc finger 155 172 IPR000967 GO:0005634|GO:0008270
Amo10g1043 839 CDD NF-X1-zinc-finger 197 243 - -
Amo10g1043 839 CDD NF-X1-zinc-finger 250 297 - -
Amo10g1043 839 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 2 834 - -
Amo10g1043 839 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 2 834 IPR034078 GO:0003700
Amo10g1043 839 CDD NF-X1-zinc-finger 357 405 - -
Amo10g1043 839 MobiDBLite consensus disorder prediction 760 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1043 Amo-Chr10 20446015 20453490 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Amo10g1043 zf-NF-X1 1.5e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1043 K15683 - gmx:100799540 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1508 20 36682174 36690135 Amo10g1043 10 20446015 20453490 hybridization