Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1031 ATGGAGGAACATTCAGTAACTGAAGGAAAAGAAGGAGGAGGAGCCTTCCAGAAGGTTCTAACCCCTTCCAAAAGCGACGACGTCGCATTCTTCAACGGCAAGCCTGTCATTGTCGCCCAGCCCCTCACAGTGGTCCGCGCCCTCACTAGCACCCGTGTCCTTGCCCCTCACAACCCTGCCGACTCGCCGAATCAACCCAGAGGAAACGAAACAACCACCGGAAACAACGCAAATGAGGAAAAGCCGCAAGAACAGGAAGCAGATTCGAAACACGTTTCTTCTGAAATACAAGAAGAAACGCGTTTCGAGGACGACGGAGATTCTCCTTCGGAGGTGGTGATGGAAACGCAGATTGAGCAACAAGAGCCCGAAGGCGAAGGTAAACGCTCTATGATGTCGTTTGAGGAGTTTCTAAAGGCTACGAACACGAAAGTTGCGTCGGAAGAGGAGGCTCTGAAACCAGTTGCTGAGAGCGTTGTTGTTCGCGTCAAGGAGGAACCGGTAGTCGCCGACGATGGCGACGTAGCGATTCTGAGTTTGAATCAAGCGCGTAATGCTGAAGTGAAGAAGAAGGATGAAGAGAGGATTCCAGGACTCGAGGACGGTGAGTTCGATGTGCCGCAAGGGTGGTTGCTTATGGGAAGAAAGGTGGAGATTGCTCTTTCGATGGCGAAGGGAGTGCGGCGATTGGTAGATAATGAGATCGTTCACTTCGATTTCCCTCGAGCTAATTCGTCTCGCAAGTCTCAATCCCTCGTTCGCATCTCAACTAAGCGTTCCGGATTGGTTGGGAGGCTTCCAATGGAGTGGGCGAACACTGTAGTTCCTCTTGTGCAATCTGGGTTTGTTCAGGTTCGAGGGCGATGCATAGGTGTACCGCATAGCCTCAAAATGATGCAAGAAATCATGCTGTTAGTGAGCTTTTATATTCACCAATCTGTATTCACAGAATGTGTTGAAAACTCTTGGAGCATAGAAGCTTGTCGTAACCGTAGCTCTACCATCAAGCCACTTCCTCAACTGTTCAAAATGCTAGAGATTAAACCATATCAGAAGGCCTATTTCACCCCTGATGATGTTTCCAAAAAGCGGCCTCGAAATACCGAGGTTGACCCAGGTGAAGCTGTAGCCTTACATATGATCAAGCAAAGAAAGTTGGCTGAATCAGGAAAGGGTGTCCAGCAGATTCCGGAGCAGAATGAGAATGAACAATCTCTTTCAGAGTCGGCTTTGAATAAGCTCATTGGAGCTTCAGAAATCTATGACCTGGAGGAGAAGGATTCGCCACGAACACTGAAGTGTGTTCTAAAGCATTACCAGAAACAAGCTCTCTATTGGATGTCAGAGATAGAAAATGGGAATAGGGCCGATAGTGCTGAGAGTAATCTTAATCCTTGCTGGTCTGCCTACAAAATATGTGAGGGAAGAATGATTTATGTGAATATCTTCACTGGAGAAGCAACAACCACAATTCCAAGAGCTACACAGATGGCAAGAGGAGGGATTCTAGCAGATTCAATGGGACTTGGAAAGACGGTCATGACAATTGCTCTGATTCTCACTAACACAGGCAGGGTTAACTCAGAAAATGATAGTCTTGTCACTGGTAGGAGGAGAAGCATATATAGGCCTAATGGTGGCACTCTTATTATTTGTCCGGTGGCATTATTAGGTCAATGGAAGGATGAGCTTGAAACACATTCAAAAGAAGACAGTCTCTCCATATTTGTTCATTATGGTGGGGGTAGAACCACTGATCCTGAGTTGCTTGCAAGGCATGATGTTGTCTTAACAACATATAATGTCCTGTCAGGAGCATATAAAAATGATGGAGAGAATAGTATCTACCACGGGGTCCAGTGGTACAGGGTTGTGCTAGATGAAGCTCATACTATTAAAGCCCATAAAAGCCAGGGTGCTATGGCTGCATTTGCTTTGACCTCACACTGCCGCTGGTGTCTAACTGGAACCCCTCTTCAGAATAGCTTGGAAGACCTATTCAGCCTGTTGTGCTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGAATAAATTGATTCAAAGGCCTTACGAGAACAATGACCCAACAGCCTTGAAATTGGTAAAGGCCATTTTAAGGACAATGATGTTAAGAAGAACTAAGGAAACTAAGGATAAGCACGGGAGGCCCATTCTTCTCCTGCCACCAGTTGATACTCATTTTGTTGAGTGTGAACAGTCAGAATCTGAACGTGATTTCTATGAAGCCCTCTTCACTAGATCTAAGGTTCAATTTGATCATTATGTTGCACAAGGAAAGGTTTTACACAACTATGCAAATATCCTTGACCTGCTATTGCAATTGAGACGGTGTTGTAACCATCCATTTTTGGTTATGTGCGGTAACTCAGAGAAATATGCCGACTTGAGCAGACTTGCAAGAAAATTCTTGCAATCAAGTGCTGAGTCACTTAACATGTGCAGTAGTCAAAATGATCCACAGAAACAAGCAGAGTTGAATAGACTTGCTAGTAAATTCCTTATCGATACTGATTCTACTTCGAGCTCCATGCAATCTCGTGCATACATTGAGGAGGTCTTGGAGCTTATTCAAAAGGGTGAAATCTTGGAATGCCCTATATGCATGGAGGCACCAGATGATCCTGTGTTTACCCCTTGTGCACATAGGTTCTGTAGAGAATGCCTATTCAGTCACTGGGGGACATCTGAGGGTGGTAAATGTGCAATTTGTCGTCAGCAACTCAGGAAAAGTGATCTCATTATTTGTCCATCTGAAAGCACGTTCAAGGTTGATATTGCAAACAATATGACAGAGTCTTCAAAGATTTCAAAGCTCTTGGATTACTTGCAAAACATTCAGACATCATCCCCTGGCGAAAAAAGTATTGTGTTCAGTCAATGGACATCGTTCTTTGATCTGTTGGAGAATCCACTGAGAAGGAAAGGAATTGATTTTCTGAGATACGATGGCAAATTGACCCAGAAACAGAGGGAGAATGTTCTGAGTGAATTCAATACAAAAGAGATAAGGGTCTTGTTGATGTCATTAAAAGCTGGTGGGGTTGGCTTAAACTTAACTGCAGCCTCAAATGTTTTTATTATGGATCCATGGTGGAATCCAGCAGTTGAGGAACAAGCAATAATGAGAATTCATCGCATTGGACAGAAGCGAAGGGTTGTTGTTAGAAGATTCATTGTCAAGGGCACAGTGGAAGACCGCTTGCAACAAGTGCAGGCCAGAAAAGAGAGAATGATAGCGGGTGCCCTTACTGATGATGATGTTCGGACTGCTAGGATTCAAGATCTCAAAATGCTATTCACATGA 3330 0.4474 MEEHSVTEGKEGGGAFQKVLTPSKSDDVAFFNGKPVIVAQPLTVVRALTSTRVLAPHNPADSPNQPRGNETTTGNNANEEKPQEQEADSKHVSSEIQEETRFEDDGDSPSEVVMETQIEQQEPEGEGKRSMMSFEEFLKATNTKVASEEEALKPVAESVVVRVKEEPVVADDGDVAILSLNQARNAEVKKKDEERIPGLEDGEFDVPQGWLLMGRKVEIALSMAKGVRRLVDNEIVHFDFPRANSSRKSQSLVRISTKRSGLVGRLPMEWANTVVPLVQSGFVQVRGRCIGVPHSLKMMQEIMLLVSFYIHQSVFTECVENSWSIEACRNRSSTIKPLPQLFKMLEIKPYQKAYFTPDDVSKKRPRNTEVDPGEAVALHMIKQRKLAESGKGVQQIPEQNENEQSLSESALNKLIGASEIYDLEEKDSPRTLKCVLKHYQKQALYWMSEIENGNRADSAESNLNPCWSAYKICEGRMIYVNIFTGEATTTIPRATQMARGGILADSMGLGKTVMTIALILTNTGRVNSENDSLVTGRRRSIYRPNGGTLIICPVALLGQWKDELETHSKEDSLSIFVHYGGGRTTDPELLARHDVVLTTYNVLSGAYKNDGENSIYHGVQWYRVVLDEAHTIKAHKSQGAMAAFALTSHCRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWAWWNKLIQRPYENNDPTALKLVKAILRTMMLRRTKETKDKHGRPILLLPPVDTHFVECEQSESERDFYEALFTRSKVQFDHYVAQGKVLHNYANILDLLLQLRRCCNHPFLVMCGNSEKYADLSRLARKFLQSSAESLNMCSSQNDPQKQAELNRLASKFLIDTDSTSSSMQSRAYIEEVLELIQKGEILECPICMEAPDDPVFTPCAHRFCRECLFSHWGTSEGGKCAICRQQLRKSDLIICPSESTFKVDIANNMTESSKISKLLDYLQNIQTSSPGEKSIVFSQWTSFFDLLENPLRRKGIDFLRYDGKLTQKQRENVLSEFNTKEIRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVVVRRFIVKGTVEDRLQQVQARKERMIAGALTDDDVRTARIQDLKMLFT* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1031 1109 SMART ultradead3 479 693 IPR014001 -
Amo10g1031 1109 MobiDBLite consensus disorder prediction 55 110 - -
Amo10g1031 1109 Pfam HIRAN domain 221 304 IPR014905 GO:0003676|GO:0008270|GO:0016818
Amo10g1031 1109 MobiDBLite consensus disorder prediction 55 80 - -
Amo10g1031 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 727 1099 IPR027417 -
Amo10g1031 1109 Gene3D - 730 1109 IPR027417 -
Amo10g1031 1109 ProSiteProfiles Zinc finger RING-type profile. 873 913 IPR001841 -
Amo10g1031 1109 Pfam Helicase conserved C-terminal domain 943 1056 IPR001650 -
Amo10g1031 1109 Pfam Zinc finger, C3HC4 type (RING finger) 871 918 - -
Amo10g1031 1109 MobiDBLite consensus disorder prediction 388 408 - -
Amo10g1031 1109 CDD SF2_C_SNF 938 1058 - -
Amo10g1031 1109 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 946 1109 IPR001650 -
Amo10g1031 1109 PANTHER DNA REPAIR PROTEIN RAD5B 364 1108 - -
Amo10g1031 1109 SMART HIRAN_2 213 310 IPR014905 GO:0003676|GO:0008270|GO:0016818
Amo10g1031 1109 Pfam SNF2-related domain 439 792 IPR000330 GO:0005524|GO:0140658
Amo10g1031 1109 Gene3D - 486 715 IPR038718 -
Amo10g1031 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 676 IPR014001 -
Amo10g1031 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 714 IPR027417 -
Amo10g1031 1109 SMART helicmild6 974 1056 IPR001650 -
Amo10g1031 1109 CDD DEXDc_SHPRH-like 436 714 - -
Amo10g1031 1109 SMART ring_2 873 912 IPR001841 -
Amo10g1031 1109 ProSitePatterns Zinc finger RING-type signature. 888 897 IPR017907 -
Amo10g1031 1109 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 364 1108 - -
Amo10g1031 1109 MobiDBLite consensus disorder prediction 81 99 - -
Amo10g1031 1109 SUPERFAMILY RING/U-box 869 923 - -
Amo10g1031 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 866 921 IPR013083 -
Amo10g1031 1109 MobiDBLite consensus disorder prediction 393 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1031 Amo-Chr10 19530992 19537003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1031 136 1108 RAD5 or RAD16-like Gene Family AT5G43530 58.426 0.0 1153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo10g1031 SNF2_N 1.8e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1031 K15505 - gmx:100806677 1351.65