Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1002 ATGGTTAGAAAAAAGTCAGAGGATGCAGGCCCATCTGCAAAGACGAAGGCAAGTAGCAAAGATGCCCCTAAGAAGGAAAAAATTTCCATCTCTGCCATGCTGGCCAGCATGGACGAAAAGCCTGATAAACCCAAAAAGCCCTCTTCCACTAAGCCCAAAGCAAAAGCTGCTCCAAAACCTTCTGCATATACTGATGGTATTGATCTTCCTCCATCCGACGAAGATGAAGATGAAGCTCTCTTGGAGGAGGAGGAAGAGAATGCTTCCAAACGGCATCAGAGGAGTGAATTGAAGGCACTTGAAGTATCAACCACAGACAAAGAGCTGAAGAAGCGTGAGAAGAAGGATATTTTAGCAGCTCATGCTGTTGAGCAGGCAAAGAAGGAAGCTCTTAAGGATGATCATGATGCTTTCACTGTGGTTATTGGAAGTCGGACTTCAGTGCTTGATGGAGACGATGATGCTGATGCTAATGTCAAAGATATAACAATAGAGAATTTTTCGGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGGAAGTCCACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTAGTTGAGCAGGAGGTAGTTGGTGATGACAAAACAGCTCTTGAAGCTGTTGTTTCAGCTAATGAAGAACTGGTTAAAGTTCGACAAGAAGTTGCTTCTCTGCAAAATGCAACTTCTGCCGAAGGAAGTGTTGAGAAAGATAATAGTAATGAGGAAGATGATGCAGGGGAGAAGCTAGCAGAGCTGTACGAGAAACTACAACTGATGGGTTCTGATGCTGCTGAAGCTCAAGCATCAAAGATTTTAGCGGGTTTGGGTTTTACGAAGGATATGCAGGGCCGACCAACAAAATCTTTCAGTGGTGGATGGAGAATGCGAATTTCTTTGGCTCGAGCACTTTTTGTGCAGCCTACTTTATTATTGCTTGATGAACCCACAAATCACCTTGACCTGAGAGCTGTTCTCTGGTTGGAAGAGTACCTGTGCCGTTGGAAGAAGACTTTGGTTGTTGTGTCACACGATAGGGATTTCCTCAATACAGTTTGCACTGAGATTATTCATCTTCATGACTTGAAACTCCATTTCTATCGTGGAAACTTTGATGACTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATGAACAAGAAGTATGAGATTTATGACAAGCAACTGAAAGCTGCAAAAAGGAGTGGTAACCGAGCTCAGCAAGAAAAGGTGAAGGACCGAGCAAAGTTTGTGGCAGCTAAAGAAGCATCTAAAGCCAAGGGCAAGGGCAAGGGCAAGGTTGATGAAGATGAGGCCCCACCAGAGGTTCCACAGAAGTGGAGGGACTACAGTGTTGAGTTTCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTTCAGCTTATTGAAGTGAGCTTCAGTTATCCGAATCGTGAGGATTTCAGACTGTCAAATGTTGATGTTGGCATTGATATGGGAACTCGTGTTGCCATTGTTGGGCCCAATGGAGCTGGAAAATCTACACTACTAAACCTTCTGGCTGGTGATTTGGTTCCAACTGAGGGTGAAGTTAGGAGGAGTCAGAAGTTGCGGATAGGAAGATACTCGCAACACTTTGTGGACCTTCTAACTATGGACGAAACCCCTGTTCAGTATCTTCTTCGTCTCCATCCAGACCAGGAGGGACTTAGCAAGCAAGAGGCTGTCCGTGCAAAACTCGGTAAGTTTGGGCTACCTAGTCATAACCATCTCACCCCTATTGCCAAACTATCAGGAGGGCAGAAGGCCAGGGTTGTCTTCACCTCAATATCCATGTCAAGACCCCATATTTTGTTGTTGGATGAACCCACTAATCATCTAGACATGCAAAGTATTGACGCATTGGCGGATGCACTAGACGAGTTCACTGGTGGAGTTGTTCTCGTTAGTCATGACTCGAGATTGATATCTCGTGTATGTGAGGATGAAGAGAGGAGTCAAATCTGGGTTGTCGAGGATGGTACTGTAAGGACTTCGGTTGGAACATTCGATGATTACAAGAACGAGTTGATGAAAGAAATCAAAGCTGAAGTTGATGACTGA 2175 0.4469 MVRKKSEDAGPSAKTKASSKDAPKKEKISISAMLASMDEKPDKPKKPSSTKPKAKAAPKPSAYTDGIDLPPSDEDEDEALLEEEEENASKRHQRSELKALEVSTTDKELKKREKKDILAAHAVEQAKKEALKDDHDAFTVVIGSRTSVLDGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKVRQEVASLQNATSAEGSVEKDNSNEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFVAAKEASKAKGKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTSVGTFDDYKNELMKEIKAEVDD* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1002 724 Coils Coil 238 258 - -
Amo10g1002 724 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 497 722 IPR003439 GO:0005524
Amo10g1002 724 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 724 - -
Amo10g1002 724 MobiDBLite consensus disorder prediction 1 111 - -
Amo10g1002 724 MobiDBLite consensus disorder prediction 69 83 - -
Amo10g1002 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 711 IPR027417 -
Amo10g1002 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 418 IPR027417 -
Amo10g1002 724 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 162 423 IPR003439 GO:0005524
Amo10g1002 724 Coils Coil 80 100 - -
Amo10g1002 724 CDD ABCF_EF-3 162 393 - -
Amo10g1002 724 CDD ABCF_EF-3 497 699 - -
Amo10g1002 724 Gene3D - 159 444 IPR027417 -
Amo10g1002 724 PANTHER - 5 724 - -
Amo10g1002 724 Gene3D - 463 724 IPR027417 -
Amo10g1002 724 SMART AAA_5 186 392 IPR003593 -
Amo10g1002 724 SMART AAA_5 523 699 IPR003593 -
Amo10g1002 724 MobiDBLite consensus disorder prediction 84 111 - -
Amo10g1002 724 MobiDBLite consensus disorder prediction 451 472 - -
Amo10g1002 724 Coils Coil 412 432 - -
Amo10g1002 724 ProSitePatterns ABC transporters family signature. 320 334 IPR017871 GO:0005524
Amo10g1002 724 MobiDBLite consensus disorder prediction 257 276 - -
Amo10g1002 724 Pfam ABC transporter 177 348 IPR003439 GO:0005524
Amo10g1002 724 Pfam ABC transporter 514 649 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1002 Amo-Chr10 18660085 18663983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1002 496 709 Calmodulin-binding Proteins AT2G36910 29.167 9.55e-15 76.6