Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo10g1000 | TTAAATCGTATTTTTTACAGCATAAATCCCTTAGCAAAATCTTCTTTTTCAACAGCTTTTGAAGGATTTTTGTTTGGATCATGGCAACCAGTGGAGCATATGAAAATAGAGTCAGGAACTATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGCCTGGAGTTGATATATGTGTTCTTTCAACCCCACAATGCACTGCTAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGATTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAGCAAGGAAGTTAAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTAGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTCCCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGACGGCATGTACAACCGGACCGGTACCTTGGTTGCGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACTTGGCCTCCCAAGATGAGTGTATCGAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTCTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAGCCGTTATAATCTCAGGAACAAGCAAAACACGCAAGAAACCGGGAACGAAGAAAAAGTGGAAGAACTTTCTTCAAGAATCTATAGCGGTTATGGCGCCGCAAAGTTACACAAGAAGAAATCAGTTGATCTAGATGATATAGACATCGAACTTGGATGGGAAGGTTTAAGTTCGAAAAGAAGAGTTCAAGAGAAAAGAAACCACCATTCAAGTTCAACAACATATTCAAAAAGTAGTAGGAATCTTGATGATGAAGAAAGATCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGCTTCTAATATTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGCAAAATCTCAAGTGGAGAAAGAAGAAATTTCTGAAACGGCTATGTTATGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGTTGAAGAAACAAAGGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTACAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGCGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTTTGCCACAGAAAACAAGGCACAGGCAAGAGGAGAATCAGCGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACTCCAGCGACTCCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGCATGAAGAAAATGGCAATGTGTGGGAACTAGTTCCAGATTTGAAAGCAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCRGGAAAAACCTTCCTCATAATCGCGTTTCTRGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCARTGATTCTTGCTCCAAAAACTACACTCTAKACATGGTACAAGGAGTTCKTCAAATGGGAGATTRCTTTACCGATTTATATRATCCATGGCCGCTCGTCGCAGAAGCAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGAGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGCCCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGCAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCTAAGTTTGTTCACGAAGCTTTATCAGAGTTGGATGGTAAATACCGGACGAATCAAAAGATTGCCGAGAAAGCAAAACATTTGCTCGAGTCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCAAGCGATGACGAAGACACGGAGCAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTCGGCAACTCTAATATTACTATGCCTGGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGCTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCGTGGCTGGTGAAAACGGTGGAGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGTCACAACATTGCACCAGTGAAGTTGCTTGTGGAATTGTTTGAGAGAGTTTTTAGTTGGAGAAAAGACAGAGAGATATTGGTACTCAACGGGGAACTTGAATTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCAGCGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCGGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCAATGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCAGCAACTATTGATCGGTAA | 3789 | 0.4072 | LNRIFYSINPLAKSSFSTAFEGFLFGSWQPVEHMKIESGTMIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRPGVDICVLSTPQCTANNNDPVWIDGRINSIKRNPHDSDCSCQYYVNFYLNQGSFGTQRTLSKEVKVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYSPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPILVLPPPKKDEPIPLPQSRYNLRNKQNTQETGNEEKVEELSSRIYSGYGAAKLHKKKSVDLDDIDIELGWEGLSSKRRVQEKRNHHSSSTTYSKSSRNLDDEERSYKDRTLNAVSYKEVIDSYLRQIEEASNIEKEQPSIREQWMATTRECEQKNEMAKSQVEKEEISETAMLWREMEMSMASSHLVEETKDSSSDAVLAETTGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFLPQKTRHRQEENQRSDSEKLEAEEDSSDSKFFSTVDASRDEPMHEENGNVWELVPDLKAKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPXILAPKTTLXTWYKEFXKWEIXLPIYXIHGRSSQKQFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMSYTSFLSHMREDSRFSHGKYMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKAKHLLESRARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPGLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVECVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFSWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACSEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFNEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYSATIDR* | 1263 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo10g1000 | 1262 | Pfam | SNF2-related domain | 679 | 932 | IPR000330 | GO:0005524|GO:0140658 | |
Amo10g1000 | 1262 | MobiDBLite | consensus disorder prediction | 456 | 481 | - | - | |
Amo10g1000 | 1262 | CDD | SF2_C_SNF | 1061 | 1190 | - | - | |
Amo10g1000 | 1262 | Gene3D | - | 650 | 946 | IPR038718 | - | |
Amo10g1000 | 1262 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 704 | 903 | IPR014001 | - | |
Amo10g1000 | 1262 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 848 | 1218 | IPR027417 | - | |
Amo10g1000 | 1262 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1065 | 1220 | IPR001650 | - | |
Amo10g1000 | 1262 | SMART | helicmild6 | 1094 | 1179 | IPR001650 | - | |
Amo10g1000 | 1262 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 665 | 905 | IPR027417 | - | |
Amo10g1000 | 1262 | Pfam | Helicase conserved C-terminal domain | 1062 | 1178 | IPR001650 | - | |
Amo10g1000 | 1262 | MobiDBLite | consensus disorder prediction | 622 | 643 | - | - | |
Amo10g1000 | 1262 | SMART | ultradead3 | 675 | 917 | IPR014001 | - | |
Amo10g1000 | 1262 | MobiDBLite | consensus disorder prediction | 367 | 415 | - | - | |
Amo10g1000 | 1262 | Gene3D | - | 1016 | 1261 | IPR027417 | - | |
Amo10g1000 | 1262 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED | 19 | 1256 | IPR044567 | GO:0080188 | |
Amo10g1000 | 1262 | PANTHER | SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 | 19 | 1256 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo10g1000 | Amo-Chr10 | 18565361 | 18570633 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo10g1000 | 1050 | 1217 | RAD5 or RAD16-like Gene Family | AT5G43530 | 31.395 | 5.32e-12 | 68.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Amo10g1000 | SNF2_N | 1.3e-17 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo10g1000 | K10875 | - | gmx:100811703 | 1359.74 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo20g1344 | 20 | 28765158 | 28770740 | Amo10g1000 | 10 | 18565361 | 18570633 | hybridization | |
Amo10g1000 | 10 | 18565361 | 18570633 | Amo17g0221 | 17 | 3186723 | 3193146 | PCT | |
Amo17g0221 | 17 | 3186723 | 3193146 | Amo10g1000 | 10 | 18565361 | 18570633 | PCT |