Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0979 ATGGCTAGAAGCTGGGTTATTGACATTGGAGGACTTGCAAAGAAAGTGAAGAATAATACAYTGCCATTAGCTGATCAAATCAATGACTGTGGAGCATATTGTGAATGTCCAATATGTCATTATCACATTGATAACATTGATGTTTCTCCTGAGTGGCCAGGCTTTCCGGCCGGCGTGAAGTTTGATCCTTCCGACRTAGAACTGTTRGAACATTTGGCAGCAAAATGTTGTGTTGGRAACAAAGTGCCTCATGCCTTTATCCAAGATTTCATCCCAACACTAGAAGGAGACCAAGGAATATGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGGCCAGTGTTCATTTCTTTCACAAAACAACTAATGCATATGCTACCGGACAACGAAAGCGTCGAAAGATTAATCATCAACTAGGCCTAAGTGAGGAGCATGTTCGCTGGCATAAGACCGGTAAGACCAAAGCTGTAACAGAAAATGGAGTACACAAGGGCTTCAAGAAGATCATGGTTCTTTACRTAAGGCCTAARAGAGGWGCAAAGCCGAATAAATCGAAATGGGTGATGCATCAGTACCATCTAGGGARTGAWGAAGGTGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTCTATCAGCAGAAGAAGAAAACTAAGAAGAATAAGCTGAATCCATTGGTGGCTGAAGATTCTGTCATGGCATTACAAGCAAGTCCAAGAACACCGAATCCAAATCCACCAAAACGGCCTCGGACAGGAAAATCTGTTGACTGTGATGACAATTTTGATGAAACTGACCTTATGCTATTCACTCAGGATGGAAAGCCTACTATTCATGGAGAATCTCTTGCCCCACCACCATCTGAAGTTCATGGTGATGAAAATAATGGAGGCTTTAACAACACTGCATTGTTATCTGTTGAAACACAACCTGTTGAAAACTCTGACTTTATTGGATTGGATGATATCTTACTATGCAAGGAACAGACATTAGATTCTTCTTCTGCTTACCTAAATGATTCTGGTTTGAAGTCCAACAATCTGAAAGGCTTTGCTTGCAATGCAAATGGAAATGCAGSTGAATTGTTTGGGGATGTGAATGATTGTTATGGAATTTCAGTGCTGGATAACCTGGGACTGGACAGTCCTCCYGATTTTGATCTTTCTGTAAGCACTCGATCACCCTTGTCGTCGTAG 1206 0.4104 MARSWVIDIGGLAKKVKNNTLPLADQINDCGAYCECPICHYHIDNIDVSPEWPGFPAGVKFDPSDXELLEHLAAKCCVGNKVPHAFIQDFIPTLEGDQGICYTHPENLPGAKKDGASVHFFHKTTNAYATGQRKRRKINHQLGLSEEHVRWHKTGKTKAVTENGVHKGFKKIMVLYXRPKRGAKPNKSKWVMHQYHLGXXEGEKEGEYVVSKIFYQQKKKTKKNKLNPLVAEDSVMALQASPRTPNPNPPKRPRTGKSVDCDDNFDETDLMLFTQDGKPTIHGESLAPPPSEVHGDENNGGFNNTALLSVETQPVENSDFIGLDDILLCKEQTLDSSSAYLNDSGLKSNNLKGFACNANGNAXELFGDVNDCYGISVLDNLGLDSPPDFDLSVSTRSPLSS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0979 401 MobiDBLite consensus disorder prediction 277 304 - -
Amo10g0979 401 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 393 IPR044799 GO:0003700
Amo10g0979 401 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
Amo10g0979 401 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 393 - -
Amo10g0979 401 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Amo10g0979 401 MobiDBLite consensus disorder prediction 234 261 - -
Amo10g0979 401 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Amo10g0979 401 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0979 Amo-Chr10 17379554 17383427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0979 36 216 NAC Transcription Factor Family AT1G28470 53.763 2.66e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo10g0979 NAM 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0979 - - ahf:112799760 533.102