Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0970 ATGCTCCGAAGGGGCTACGCAAAGCAGGTGAAGGAGGTTCGCAATCTGTACATCCACGAAATGGAGCTGCTTCAGATCGAGAAGGAGCTCAAGGAAAAAGCTTGCAGAGAATCCCTTAGAGTTGCCAATGAGGAGCACAAGAATCTCAAGGCCGAAGCTGCGCAGATTAGGGCTCCGGAGCGAAAGATCGCACAAAGTTGTTTGCAGCTATTTGATGGTCACAATGGAACTGCTGCTGCTATTTATGCCAAGGAGAATCTTCTAAACAACATTTTAAGTGCAATTCCTTCAAATCTTAACAGAGATGAGTGGATAGCAGCATTGCCCAGGGCTTTGGTTGCAGGATTTGTGAAAACTGACAAAGATTTTCAACAGAAAGGTATGACTAATTATTTCTCTTATATATTGCCAAATGAGCTTGCACATGCCCAATTCCAGAAGTATATTGACTATCTGTTTTTGGGAGATTATGTTGATAGAGGACAGCACAGCTTGGAAACCATTACCTTGCTGCTTGCACTTAAGATTGAGTATCCTGAGAATGTTCACCTGATACGTGGTAACCATGAAGCTGCTGACATAAATGCACTATTTGGTTTTCGTATTGACTGCATTGAAAGGATGAACAAAAGCATTGCTGAGTGTGGTTCTTTAGTTGGTGATTACATCAAAGACCAAGTAATAGGGTATCTGGATCAGTTTGGCACTTCACTTCCTGTTAAGATCAACCTTGGAATTTACCTGAAAGATAAAAGTAAAGAGCTCTCTATATTGGTAGATAGGTCTGTGGGGGGATCCAGCATCAAAGATGGGCAATTAGAACTAATTGTTAAATTCCTCTGA 843 0.4164 MLRRGYAKQVKEVRNLYIHEMELLQIEKELKEKACRESLRVANEEHKNLKAEAAQIRAPERKIAQSCLQLFDGHNGTAAAIYAKENLLNNILSAIPSNLNRDEWIAALPRALVAGFVKTDKDFQQKGMTNYFSYILPNELAHAQFQKYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRIDCIERMNKSIAECGSLVGDYIKDQVIGYLDQFGTSLPVKINLGIYLKDKSKELSILVDRSVGGSSIKDGQLELIVKFL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0970 280 Gene3D - 137 234 IPR029052 -
Amo10g0970 280 Gene3D - 240 278 - -
Amo10g0970 280 SUPERFAMILY Metallo-dependent phosphatases 142 211 IPR029052 -
Amo10g0970 280 SUPERFAMILY PP2C-like 68 130 IPR036457 -
Amo10g0970 280 Coils Coil 32 52 - -
Amo10g0970 280 Pfam Calcineurin-like phosphoesterase 150 209 IPR004843 GO:0016787
Amo10g0970 280 SMART pp2a_7 83 277 IPR006186 GO:0016787
Amo10g0970 280 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL1-RELATED 142 209 - -
Amo10g0970 280 ProSitePatterns Serine/threonine specific protein phosphatases signature. 185 190 IPR006186 GO:0016787
Amo10g0970 280 Gene3D - 27 136 IPR036457 -
Amo10g0970 280 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 142 209 - -
Amo10g0970 280 PRINTS Serine/threonine phosphatase family signature 184 208 IPR006186 GO:0016787
Amo10g0970 280 PRINTS Serine/threonine phosphatase family signature 151 178 IPR006186 GO:0016787
Amo10g0970 280 SUPERFAMILY Galactose mutarotase-like 242 277 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0970 Amo-Chr10 17171691 17174245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0970 66 130 PP2C-type Phosphatase Gene Family AT1G47380 78.462 3.43e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0970 K01090 - ahf:112748460 233.032