Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0930 ATGAAGGGATATGAGCCTCGTTCAAGTTCTTCTTGTGCAGCCTGCAAATTACTCAAGAGAAGATGCATCCCCAACTGCATCTTCGCGCCGTATTTTCGCTCCGATGAGTGCAAGAAATTCGCGAAAGTTCACAAGGTGTTCGGAGCAAGCAATGTGAGCAAGATCCTCATTGAGGTCCCTGAAGAGCAAAGAGAGGACACGGTGAATTCTCTCGCTTATGAGGCCGAAGCCAGGCTCCGCGACCCAGTTTATGGATGCATTGGCGCCATAGCGCTCCTTCAGAGGAAGATGGTAGAGTTACAACACGATCTGGCGATAGCTAAAGATCGCCTGGCTCGTGTTGTAGCTTCTACTACATCTGCCTCTGATTCTGCTTTGGTCGCTACTACTACTTTTAGTAGTAGCGATGAAATTATGCATGGTTCTTCTTATTCCCATGTTAGCTTGCCCCCTTTTCCTTGCAGTGATTTCAGTGATAGCTTCTGCCATAGCTCTTCTTCTTCATCTCAATTCTTGAGCCGACATGATCAAGCGGTTGATGATTTCACTCAAATCCCATACATATTTTAA 570 0.4632 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARVVASTTSASDSALVATTTFSSSDEIMHGSSYSHVSLPPFPCSDFSDSFCHSSSSSSQFLSRHDQAVDDFTQIPYIF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0930 189 Coils Coil 90 110 - -
Amo10g0930 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 163 - -
Amo10g0930 189 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Amo10g0930 189 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Amo10g0930 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0930 Amo-Chr10 15544977 15545546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0930 1 111 AS2 family AT3G11090 81.081 1.64e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo10g0930 LOB 1.6e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1445 20 32944472 32945306 Amo10g0930 10 15544977 15545546 hybridization