Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0928 ATGAACAGAAACGCGATAGGGAGAGGGAAGATCGCGACAAGGAGGATCGACAATTCCACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGTTGAAGAAGGCGAAGGAGCTTGCGATTTTGTGCGATGCTGAGGTTGGAGTTATGATCTTTTCCAGCACTAACTCTATGATTTCTCCAGTACCAGCTGCTCAAGACTCAGAAAAAGGCAAGGGCTGGAAGCGATTTGAGTTTGACAAGGATGTGCCTCTTGAAGATGAGGAAATTGAAGATGATGCTTCCTTGGTCAAGCAAATTGGCCAGAGTTTTCGGTATTCTAAAATAGTGGCAAGAAGGGAGGAACAAATCCAAGCTGCTCATGACGAAGCCATGTTTGCTATCCATACTCTTTTCAACATATCTACTTGGTTAAATAGGATATTGACATGA 435 0.446 MNRNAIGRGKIATRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTNSMISPVPAAQDSEKGKGWKRFEFDKDVPLEDEEIEDDASLVKQIGQSFRYSKIVARREEQIQAAHDEAMFAIHTLFNISTWLNRILT* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0928 144 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 7 57 - -
Amo10g0928 144 Gene3D - 18 112 IPR036879 GO:0003677|GO:0046983
Amo10g0928 144 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Amo10g0928 144 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Amo10g0928 144 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Amo10g0928 144 PANTHER SERUM RESPONSE FACTOR HOMOLOG 7 57 - -
Amo10g0928 144 ProSiteProfiles MADS-box domain profile. 6 59 IPR002100 GO:0003677|GO:0046983
Amo10g0928 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 59 IPR002100 GO:0003677|GO:0046983
Amo10g0928 144 SUPERFAMILY SRF-like 6 63 IPR036879 GO:0003677|GO:0046983
Amo10g0928 144 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0928 Amo-Chr10 15427942 15431355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0928 6 59 MADS-box Gene Family AT2G14210 83.333 1.24e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo10g0928 SRF-TF 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0928 K09264 - ahf:112754627 225.328