Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0916 ATGGAGAATTATGATCATTGTTCTTTATTTCTAGACCCTTCACAAACACTGCCTCATGTCTCAGATTGTAATTCTCTTCATCATCAATTTGGTGGTGAGTTTCATTCATGGCCGGCACCGGTCGAAATGGTGGCCGGAGACAGAGCTGCTAGTGCTTCCAAGAGCCATAGTCAGGCCGAGAAGCGGCGCAGGGACCGGATCAATGCACAGCTTACAAGTCTAAGGAAACTAATTCCAAAATCTGATAAGATGGACAAGGCAGCTTTACTAGGAAGTGTGATAGAGCAAGTGAAGGATCTAAAGAGAAAAGCAATTGAAGTTAGCAAAGCCATAACCGTTCCAACTGAATCCGACGAAATAACAATCGAATATGATCCCAGTGCGCGTGACGAGAGCCTAAAGATGAAGAACAAAGTTGTGATCAAGGCATCTGTTTGCTGCGACGATCGGCCGGAGCTGTTCTCGGAACTAATCCAAGTCCTAAAAGGATTAAGGCTCACGGCAGTTAGAGCTGACATAGCAAGTGTTGGTGGAAGAATGAAAGGCACATTTTTGCTTTGTTCTAAGGATAATGAAAAGGTTGTTTGCCTTGGTACTCTCAAGCATTCACTTAAATCAGTTGTGACAAAAATTGCTTCATCTTCCATTGCAACAAATTGGCCTACTAGAAGTAAGAGGCAAAAGTCCATATTGAAGACTGAATGGTAA 708 0.4308 MENYDHCSLFLDPSQTLPHVSDCNSLHHQFGGEFHSWPAPVEMVAGDRAASASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKMDKAALLGSVIEQVKDLKRKAIEVSKAITVPTESDEITIEYDPSARDESLKMKNKVVIKASVCCDDRPELFSELIQVLKGLRLTAVRADIASVGGRMKGTFLLCSKDNEKVVCLGTLKHSLKSVVTKIASSSIATNWPTRSKRQKSILKTEW* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0916 235 Gene3D - 46 109 IPR036638 GO:0046983
Amo10g0916 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Amo10g0916 235 SMART finulus 57 106 IPR011598 GO:0046983
Amo10g0916 235 CDD bHLH_AtAIG1_like 47 122 - -
Amo10g0916 235 PANTHER TRANSCRIPTION FACTOR BHLH51 25 232 - -
Amo10g0916 235 PANTHER TRANSCRIPTION FACTOR BHLH30 25 232 IPR045847 GO:0003700|GO:0006355
Amo10g0916 235 Pfam Helix-loop-helix DNA-binding domain 54 100 IPR011598 GO:0046983
Amo10g0916 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 103 IPR036638 GO:0046983
Amo10g0916 235 CDD ACT_UUR-ACR-like 144 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0916 Amo-Chr10 15117945 15119658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0916 30 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 46.948 7.02e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo10g0916 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0916 - - adu:107469423 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g0916 10 15117945 15119658 Amo17g0250 17 3873682 3875678 PCT
Amo17g0250 17 3873682 3875678 Amo10g0916 10 15117945 15119658 PCT