Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0903 ATGCAGAACCAGAACCAGATTTTGCAACATGTGATGAGAAAGAACAACCACATATCTGAAAACAAGAAAGAAAGATGGAAGACTATTGTGTTCTTCAATGTTCACTCTTTCTGGATTCTTCTTCTTATGCTGCTGCTGCTGCTGCTTCATTCCACAGTTATGAATCCAGTTTCATGTGAAGATGATCGCTGGGATGGAGTGGTCGTAACAGAATCGAATTTCCTAGCACTTCGAGCCTTCAAGGAAGAGCTCATTGATCCAAAAGGATTCTTGAGAAGTTGGAACGACACCGGCTACGGTGCATGTTCCGGAAGCTGGAATGGCATAAAGTGTGCAAAGGGACAAGTTATAGTAATCCAGCTTCCATGGAAGGGATTGCGCGGCCGAATAACGGAACGGATTGGACAGCTTCAGGGTCTCCGGAAGCTTAGTCTTCACGATAACCGAATCGGCGGCGCAATCCCTTCGTCCTTGGGGATTCTCCCAAGCCTCAGAGGTATTCAGTTATTTAACAATATGTTAACAGGTTCAATCCCTCTTTCAATTGGTTACTGCCCTTTGCTTCAGTCTCTTGACTTAAGCAACAATTTTCTCACTGGAACAATCCCTGATAGCATTGCCAATTCCACAAAGATTTATTCTCTTAACCTTAGCTTCAATTCCTTCCATGGTTCCATTCCAATTAGCCTGACTCGCTCGCGTTCGCTGACGTTTCTTTCGCTTCAGCACAATAACCTCTCTGGATCCTTGCCTAATTCATGGGGTGGTGATGGTAGCATGAATAATGGCCCCTTCTTTAGGCTTCAAAGTTTGATTCTTGATCATAACTTTTTCACTGGCATTGTTCCTTCTTCTTTGGGAAGACTAAGAGAACTGAATGAGATTTCCCTTGGTCATAATCGGTTTATTGGAGCTATACCAAATGAATTAGGAACACTTTCTAGGCTCGAATCGTTTGACTTTTCGAATAATGAACTTAATGGAAGCTTGCCTGCTACACTCTCTAATTTATCCTCACTAAAACTATTGAATTTAGATAACAACCATCTTGGTAACCAAATACCAGAAGCTTTAGGGAAACTGCATAATCTTTCTGTTCTGATTCTGAGTAGGAACAAGTTTAGTGGTCATGTTCCTGCAAGTATTGGAAACATTTCGGCGCTTTCACAGCTCGATTTGTCAATGAATAATCTCAGCGGAGAAATTCCATTATCTCTTGGGACACAAGTTAGTCTTAAGTTCTTCAATGTGTCTTACAACAATCTCTCAGGTCCCGTTCCAACTATGCTTGCTAAGAAATTTAACTCAAGTTCCTTTGTGGGAAACAATCAATTATGTGGCTATAGCCTTTCATCTCCATGTCTTGCACCTGCTCCATCAGATGAAGTTCTAGCACCGTTTCCACATCAAGAGTCAAAAGATTGCCATCATAGGAAACTAGGTACCAAAGACAAGATTCTCATAGCAGCAGGGGCACTGCTCTTAGTCCTCATTACACTATGCTGCATCCTGCTCTTCTGCTTGATCAGAAAGAGGGCGAATTCTACGGCAGATAATGGAAAGGCCACAAGCAGAACTGCTGGTACGACTAGGACAGAAAGAGGAGTCGGGCCGCCTGTTTCTTCTGGTGAAGTGGAAGAGGGCGGTGATGCTGGAGGGAAGCTAGTCCATTTTGATGGACCAATTAAGTTTACAGCTGACGATCTCTTGTGCGCAACGGCAGAAATAATGGGAAAGAGCACCTATGGAACTGTGTACAAGGCTACAATGGAGGATGGAAGGCAAGTTGCAGTGAAGAGATTGAGAGAAAAGATCACAAAGAGTCAGAGAGAATTTGAATCAGAAGTTTGTGTTCTTGGGAGAATTAGACATCCCAATCTTTTGGCTCTAAGGGCCTATTACTTGGGACAAAAAGGGGAAAAGCTCCTTGTTTTTGATTACATGCCTAGAGGAAGCCTTGCTTCTTTCCTACATGTTCTTAGACCTGAAACATACATTGATTGGCCAACAAGGATGAAAATTGCGCAGGGAATTGCGCGTGGCTTGTTTTACCTTCATTCGAAGGCAAACATCATACATGGAAACCTTACATCCAGCAATGTGCTGCTTGATGAGAACACAGATGCTAAGATAGCAGATTTTGGCCTTTCTAGGTTGATGACAGCTGCTGCTAATTCCAATGTGATAGCTACGGCTGCAGCACTAGGATATCGCGCGCCTGAGCTCTCGAAACTCAAGAAGGCTAACACAAAATCTGATATATACAGCTATGGTGTGATCTTGCTGGAAATCTTGACAGGAAAGTCACCTGGTGAAACTAGGAATGGCTTGGATTTGCCTCAGTGGGTTGCTTCTATTGTCAAAGAAGAGTGGACAAATGAGGTTTTCGATTCGGATTTGATGAGGGACAAGGCATCATCCTCAACAGTTAATGATGAGTTGCTTAACACCTTGAAGCTTGCTTTGCACTGCGTTGATCCTACACCGTCACCACGGCCGGAAGCTCACCAAATTCTCCAGCAGCTAGAAGAGATTAGACCAGAGTTACCACCAGTTAGCCCTGGAGAAGAGTCTTGGCATCATGTTTAG 2589 0.4345 MQNQNQILQHVMRKNNHISENKKERWKTIVFFNVHSFWILLLMLLLLLLHSTVMNPVSCEDDRWDGVVVTESNFLALRAFKEELIDPKGFLRSWNDTGYGACSGSWNGIKCAKGQVIVIQLPWKGLRGRITERIGQLQGLRKLSLHDNRIGGAIPSSLGILPSLRGIQLFNNMLTGSIPLSIGYCPLLQSLDLSNNFLTGTIPDSIANSTKIYSLNLSFNSFHGSIPISLTRSRSLTFLSLQHNNLSGSLPNSWGGDGSMNNGPFFRLQSLILDHNFFTGIVPSSLGRLRELNEISLGHNRFIGAIPNELGTLSRLESFDFSNNELNGSLPATLSNLSSLKLLNLDNNHLGNQIPEALGKLHNLSVLILSRNKFSGHVPASIGNISALSQLDLSMNNLSGEIPLSLGTQVSLKFFNVSYNNLSGPVPTMLAKKFNSSSFVGNNQLCGYSLSSPCLAPAPSDEVLAPFPHQESKDCHHRKLGTKDKILIAAGALLLVLITLCCILLFCLIRKRANSTADNGKATSRTAGTTRTERGVGPPVSSGEVEEGGDAGGKLVHFDGPIKFTADDLLCATAEIMGKSTYGTVYKATMEDGRQVAVKRLREKITKSQREFESEVCVLGRIRHPNLLALRAYYLGQKGEKLLVFDYMPRGSLASFLHVLRPETYIDWPTRMKIAQGIARGLFYLHSKANIIHGNLTSSNVLLDENTDAKIADFGLSRLMTAAANSNVIATAAALGYRAPELSKLKKANTKSDIYSYGVILLEILTGKSPGETRNGLDLPQWVASIVKEEWTNEVFDSDLMRDKASSSTVNDELLNTLKLALHCVDPTPSPRPEAHQILQQLEEIRPELPPVSPGEESWHHV* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0903 862 Pfam Protein tyrosine and serine/threonine kinase 574 842 IPR001245 GO:0004672|GO:0006468
Amo10g0903 862 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Amo10g0903 862 MobiDBLite consensus disorder prediction 518 549 - -
Amo10g0903 862 Gene3D Ribonuclease Inhibitor 185 263 IPR032675 -
Amo10g0903 862 Gene3D Ribonuclease Inhibitor 264 460 IPR032675 -
Amo10g0903 862 Gene3D Phosphorylase Kinase; domain 1 577 648 - -
Amo10g0903 862 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 7 854 - -
Amo10g0903 862 SMART LRR_typ_2 361 385 IPR003591 -
Amo10g0903 862 SMART LRR_typ_2 137 161 IPR003591 -
Amo10g0903 862 SMART LRR_typ_2 265 288 IPR003591 -
Amo10g0903 862 SMART LRR_typ_2 234 256 IPR003591 -
Amo10g0903 862 SMART LRR_typ_2 337 360 IPR003591 -
Amo10g0903 862 SMART LRR_typ_2 313 336 IPR003591 -
Amo10g0903 862 Gene3D Transferase(Phosphotransferase) domain 1 649 850 - -
Amo10g0903 862 Gene3D Ribonuclease Inhibitor 72 184 IPR032675 -
Amo10g0903 862 Pfam Leucine rich repeat N-terminal domain 75 111 IPR013210 -
Amo10g0903 862 ProSiteProfiles Protein kinase domain profile. 571 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0903 862 SUPERFAMILY Protein kinase-like (PK-like) 575 851 IPR011009 -
Amo10g0903 862 SUPERFAMILY L domain-like 110 452 - -
Amo10g0903 862 Pfam Leucine Rich Repeat 188 207 IPR001611 GO:0005515
Amo10g0903 862 CDD STKc_IRAK 577 845 - -
Amo10g0903 862 PRINTS Leucine-rich repeat signature 188 201 - -
Amo10g0903 862 PRINTS Leucine-rich repeat signature 337 350 - -
Amo10g0903 862 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 7 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0903 Amo-Chr10 14706730 14709435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0903 64 847 Receptor kinase-like Gene Family AT3G51740 62.643 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo10g0903 PK_Tyr_Ser-Thr 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0903 - - aprc:113851294 1196.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g0903 10 14706730 14709435 Amo17g0215 17 3078885 3081748 PCT
Amo17g0215 17 3078885 3081748 Amo10g0903 10 14706730 14709435 PCT