Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0872 ATGGATCCTTCAAGCTCAGATTGTGTGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTCGGAATGACCTTTACCACCCTTGAAGATGCCGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCAACCGAGAAGACCAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTTCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGCAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACGATAGAGAATAACGAGGAGGCCGGTATCAGACCAAGCAAAACCTACCAATCATTTGTTGCGGCTGCCGGGGATCTGTACGAAGACCGTCACATATGGGTTCCTATCTATCTGGACCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTACATCACCCGGAACAGCTCGCTCATTCAGTTCGTCAAACAGTACGATAATTGCCTCGGAAGCAGGGAGCAAGTAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCACGCAAAGTTTAGGGAAGTCCAAGCCCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCTGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTCGCGGTTACCTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCCCCTAGATACATACTAGAACGATGGAGCAAGAAGGTAAAGAGGCAACACACACACATCAAGAGCAGCCACGACGAGCCACTAATGGAGCCAAGAAGCAAGAGGTTCGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCCTCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCCGAGATGGAAGCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCTGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGCTGGAGAAACAGATTGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGCAGGCGCATTCAAATTGCAGCCAATATCAGGGACAAGTTATAAATTATCAGCTCAGGGTACCAGCAGCAGGGGATAA 1575 0.4584 MDPSSSDCVLNPGEVDYEFESNEVPEPLSVVDDELVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRCTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGSWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAGIRPSKTYQSFVAAAGDLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKYITRNSSLIQFVKQYDNCLGSREQVERESDAADFHTVIPCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFAVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRQHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMAEMEALKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLEKQIANATKKKKTKVLSEINLFDAASAGAFKLQPISGTSYKLSAQGTSSRG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0872 524 ProSiteProfiles Zinc finger SWIM-type profile. 316 352 IPR007527 GO:0008270
Amo10g0872 524 PANTHER OS03G0843700 PROTEIN 180 424 - -
Amo10g0872 524 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo10g0872 524 PANTHER OS03G0843700 PROTEIN 26 148 - -
Amo10g0872 524 MobiDBLite consensus disorder prediction 436 474 - -
Amo10g0872 524 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 180 424 IPR031052 GO:0006355
Amo10g0872 524 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 148 IPR031052 GO:0006355
Amo10g0872 524 Pfam SWIM zinc finger 325 349 IPR007527 GO:0008270
Amo10g0872 524 SMART 26again6 327 354 IPR006564 GO:0008270
Amo10g0872 524 MobiDBLite consensus disorder prediction 442 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0872 Amo-Chr10 14016786 14019749 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo10g0872 FAR1 1.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0872 - - adu:110280503 629.787