Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0829 ATGGCTCTTACACTTCAGTGTGCCCTCTCTCACATACTCAGTTTCCTAGTGTTCCTGTCAATATTCCTAGTGAACCCTTCCTTCTGCTTCAACCCTAAAAAGCTTGTGAATGCTTCATTCTCATACACCCCATCTGGTTCAGATTGGTCACCGGCACTTGCCACTTGGTATGGACCTGCTAACGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAGTTACTGTTGGCCAAGCTCCAATCTCTGCAATGGTATCAGCAGGAAGCCCTCGTTTATATGAAAACGGCAAAGGCTGTGGTTCTTGTTACGAGGTGAGGTGCACTGGGAATTCAGCATGCTCGGGAGAGCCTGTGAAGATAGTGATGACAGATGAGTGCGATGGATGTGGTTCAGATGCCGAATACCATTTTGATTTGAGTGGCACTGCTTTTGGTGCCATGGCTCTCTCAGGTCAAGATGGCACCTTGCGCAATGCTGGCAAAATCAACATTCAGCATCGAAGAGTTGAATGCAACTACCCTGGTGTGTCAATTGCATTCCACGTGGATGCTGGATCGAACCAAGAATACTTCGCTGCCGTGATTGAATACGAGGATGGAGATGGTGACCTTTCAAAAGTTGAACTCAAAGAAGCACTTGACTCAGCCTCATGGTACACCATGGATCAATCATGGGGTGCTGTTTGGAAACTTGACAAAGGGTCACCACTCAGAGCACCTTTCTCTCTTCGGCTAACCACACTCGAGTCCGGTAACTCTATTGTGGCCAACAATGTCATACCTGCTGGCTGGGTTCCCGGTCACACCTACAGATCCATTGTTAATTTTCAAACCTAG 837 0.4779 MALTLQCALSHILSFLVFLSIFLVNPSFCFNPKKLVNASFSYTPSGSDWSPALATWYGPANGDGSEGGACGYGVTVGQAPISAMVSAGSPRLYENGKGCGSCYEVRCTGNSACSGEPVKIVMTDECDGCGSDAEYHFDLSGTAFGAMALSGQDGTLRNAGKINIQHRRVECNYPGVSIAFHVDAGSNQEYFAAVIEYEDGDGDLSKVELKEALDSASWYTMDQSWGAVWKLDKGSPLRAPFSLRLTTLESGNSIVANNVIPAGWVPGHTYRSIVNFQT* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0829 278 Pfam Lytic transglycolase 86 165 IPR009009 -
Amo10g0829 278 PANTHER EXPANSIN-B2-RELATED 11 277 - -
Amo10g0829 278 SUPERFAMILY Barwin-like endoglucanases 38 175 IPR036908 -
Amo10g0829 278 SMART dpbb_1 85 166 IPR007112 -
Amo10g0829 278 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Amo10g0829 278 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Amo10g0829 278 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Amo10g0829 278 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Amo10g0829 278 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Amo10g0829 278 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Amo10g0829 278 Gene3D - 32 172 IPR036908 -
Amo10g0829 278 PANTHER EXPANSIN-B3 11 277 - -
Amo10g0829 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 272 IPR007117 -
Amo10g0829 278 SUPERFAMILY PHL pollen allergen 178 272 IPR036749 -
Amo10g0829 278 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576|GO:0019953
Amo10g0829 278 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576|GO:0019953
Amo10g0829 278 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Amo10g0829 278 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Amo10g0829 278 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Amo10g0829 278 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Amo10g0829 278 Pfam Expansin C-terminal domain 178 261 IPR007117 -
Amo10g0829 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 176 IPR007112 -
Amo10g0829 278 Gene3D - 173 277 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0829 Amo-Chr10 13244150 13247702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0829 25 276 Expansin Gene Family AT1G65680 59.921 1.73e-108 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0829 - - gmx:548090 472.241