Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0817 ATGAATTCACCATTGACGCAGTTCGTTTCTTCGAGAAGGATGGGCGTGTATGATCCTATCCAGCAGATCAATATGTGGGGAGATAGCCTCAAAAGTAATGTCAATTTAAGTGCATCCATTCCCTTAATTGATGAAGCCGACATTAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATCCTGGGAACAAATATCAAATATGACCAAGAAGCAAGTAAACCTATTGATAAGATACAGAGACGACTTGCGCAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGCGGAAAAAGGCCTATGTGCAGCAATTAGAATCTAGTCGTTTGAAGTTGATGCAGCTAGAGCAAGAGCTTGAACGTGCGAGACAGCAGGGAATGTATGTAGCCGGTGGATTGGATACTAATCATCTAGGTTTTGCTGGACCTATTAATTCAGGAATCACAGCTTTCGAGATGGAGTATGGACACTGGGTTGAGAAGCAAAATAGTCAAATCTTAGAACTGAGAAACGCTTTAAATTCTCATATTGGTGACTTAGAGCTGAGGATACTTGTAGATGATATGATGAATCACTACACTGAAATCTTTCGTATGAAATCTGCTGCTGCAAAAGCAGACGTTTTCTATGTAATGTCCGGCATGTGGAAAACTACGGCCGAGAGATTTTTCTTATGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGGTTCTTCTTCCTTTGATTGAACCTTTGACGGAGCAACAACGATTGGATGTCTGCAACCTCGGACAATCATGTCAGCAAGCCGAAGACGCCCTTTCACAAGGTATGGAGAAACTACAGCAAACACTTGCTGATAGCATAGCTGCCGGACAACTGATGGAAGGAAGTTATATTCCGCAGATGGCTACTGCAATAGAGAAGTTGGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGATCATCTTCGGAAGGAGACACTGCAGCAGATGTCTCGAATATTGACTATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTGGGGGAATACTTCCAACGCCTGAGAGCTCTGAGCTCGCTTTGGTCGAATCGTCCTCGCGAACCAGCTTAG 1089 0.4435 MNSPLTQFVSSRRMGVYDPIQQINMWGDSLKSNVNLSASIPLIDEADIKFDSQSEDASHGILGTNIKYDQEASKPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYVAGGLDTNHLGFAGPINSGITAFEMEYGHWVEKQNSQILELRNALNSHIGDLELRILVDDMMNHYTEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLTEQQRLDVCNLGQSCQQAEDALSQGMEKLQQTLADSIAAGQLMEGSYIPQMATAIEKLEALVSFVNQADHLRKETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0817 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Amo10g0817 362 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Amo10g0817 362 Coils Coil 97 124 - -
Amo10g0817 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Amo10g0817 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Amo10g0817 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Amo10g0817 362 Gene3D - 77 127 - -
Amo10g0817 362 Pfam bZIP transcription factor 78 112 IPR004827 GO:0003700|GO:0006355
Amo10g0817 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Amo10g0817 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Amo10g0817 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0817 Amo-Chr10 12962905 12966946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0817 1 362 Calmodulin-binding Proteins AT5G65210 70.924 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo10g0817 DOG1 5.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0817 K14431 - gmx:100793353 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1238 20 25421147 25425270 Amo10g0817 10 12962905 12966946 hybridization
Amo13g3849 13 129246939 129251925 Amo10g0817 10 12962905 12966946 PCT
Amo03g2949 03 121404282 121409309 Amo10g0817 10 12962905 12966946 PCT