Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0790 ATGGCAACCACGTTGACTTGGAGGTTAGCTGCCAACAATGGCACCACCCTCGCTGCTAATGACCTGGAAAGAAATGGTGATGGGAAGGTTCAAGATACAGAGTCTCCAACACCCCATTCTGTTTTGAAGATGGGACTGAGAGAACGTAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTAAGAGTTCATCTTCTATGCTAGAGAAAGAGAACTCCCTGAAGCAGTTATCGGAGCTTATTGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGATCCTTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTTAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTTTACTCAAGTCCAGTTCTGGTGAAGGTCAAGTAGCTGCTGCCAAGACTATTTATGCTGTCTCTCAAGATGGTGCCAAAGATCATGTTGGTTCAAAAATTTTTTCAACTGAAGGTGTTGTGCCAGTTCTTTGGGAACAATTGAAAAAGGGCATGAAGACTGGAAACGTAGTTGACAATTTATTGACTGGAGCATTGAAGAATCTCTCCAGCAGTACAGAGGGATTCTGGAATGCCACAGTACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTAACAACAGGACAGTCTGGCACTCAAGCCAATGTGTGCTTTTTACTTGCGTTCTTGATGATGGAGGATGCATCTATTTGTTCAAAAGTGTTGGCAGCAGAGGCAACAAAACATCTTCTCAAACTATTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCCGGGGCGCTCAAATCTCTGTCGGCTCAGTGCAAAGATGCAAGACGAGAGATAGCCAATTCTAATGGCATTCCTACTCTGATTAATGCTACCATAGCGCCTTCGAAAGAGTTCATGCAAGGAGAGCATGCTCAAGCATTACAGGAAAATGCTATGTGTGCCCTAGCGAACATCTCTGGTGGCTTGTCTTCTGTGATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACTTCAGCTGCACAAATTGCTGACACTTTAGGGGCTTTAGCTTCGGCTCTTATGATATATGATGAAAAGGCAGAATCCACAAGAGCATCGGATCCTTTGGCAGTTGAGCAGACATTACTCAATCAGTTTAAGTCTCAGTCTCCCTTCCTTGTGCAGGAACGGACCATTGAAGCGCTGGCTAGTTTATATAGTAATCCCATACTATCAATTAAACTTACAAATTCCGATGCAAAGCGTTTGCTAGTTGGTTTAATAACAATGGCTACCAGCGAAGTGCAAGACGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATAGTGGAGGCAGTTTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTTTGGGACTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTACTATGCCTTCTGTCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCGCTTGTGCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAAGAAGATTCAGCAACAATCCTTAGAAACCTATGCAATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCAGTTCCCGCATTGTTGTGGCTATTAAAGAATGGAAGCGCAAATGGGAAGGAGATTGCTGCAAAAACCTTGAATCACTTAATCCATAAATCTGATACAGCAACTATTAGCCAGCTTACAGCACTATTGACTAGTGATCTACCAGAATCTAAGGTTTATGTCTTAGATGCCTTGAGAAGTATGCTTTCTGTTGTTCCTCTTAGTGATATTTTACGCGAAGGTAGTGCTGCGAGTGATGCAATTGGTACAATGATAAAAATTTTGGGCTCAACCAAGGAAGAAACTCAGGCGATGTCTGCAGCAGCTCTAGCAGGACTTTTTGAAACAAGAAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTCTATCAGTCTCGAAATTGCTTAATGTCGAATATGAAAGTGTCTTGATGGAAACCTCACACTGCCTGGCTGCAATATTTCTTTCAATCAAAGAGAACAGGGATGTAGCTGCTATTGCTAGAGATACATTGTCTCCATTGATTGCACTAGCCAACTCCTCAGTTTTGGAAGTAGCAGAGTTGGCAACATGTGCTGTGGCAAATCTTATTTTAGATGGTGAAATTGCAGAGAAAGCTGTTGCAGAAGAGGTTATCATGCCTGCTACAAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACACATGCAGCAGCAGCAATTGCTCGCCTCTTACATTCTAGGCAAGTTGATTATGCTGTAACAGAATGTGTGAATCGTGCTGGTACTGTTCTTGCGTTAGTTTCTTTTCTAGATTCTGCCATTAATGGATCTGCTGCCACATTGGAGGCTCTAGATGCACTTGCTATTCTGTCCAGATCAGAAAAAACCAGCGGAAAGAGTAAACCTGCATGGACAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCTATAGTCCTGTCTATTGCTGATTCTACACCAACATTACAGGATAAAGCTATTGAGATATTATCACGACTATGTAAGGATCAGCCTCTTGTCTTAGGGGACACTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGGATAATTTCCACTTCCACAAATGTAAAAAAAAGAATTGGAGGAGCTGCAGTGCTTATTTGTGCTGCAAAAGTAAATCATCAGAAACTGCTGGAGGATCTGAACTTTTCAAACTTGTGTACTGATCTTGTTCGATCACTTGTTGATATGCTTAATTCTTCAGACTCATCTTTGGCCAATCATGGAGATGACAATAGGGAAGTCATCAGCATTTGCCGGCATACAAAAGAAGAATCCAGTGATGATCAATCAAACAGTGGCACTGCCATTATATCTGGTGCCAACTTAGCTATATGGTTACTGTGTATCCTTGCTTGTCATGATGAAAAAAGTAGAATTGCAATAATGGAGGCTGGAGCGATTGAGGTTCTCTCAGAGAAGATCTCAAATTATTTCTCACAGTATAGTCAGATTGATGATAAAGAAGACAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTCCAAGATAGAGATATTATACGTGCACATGCAACCATGAAATCTATACCAGCTCTTGCCAATTTGCTGAAGTCAGAAGAATCAGCAAACAAATACTTTGCAGCACAATCAATAGCTAGTCTGGTCTGTAATGGCAGCAGGGGAACACTTCTTTCTGTGGCTAATTCTGGGGCAGCAAATGGACTCATCACATTGCTTGGCTGTGCCGATACTGATATTCAGGATCTTCTGGAATTGTCTGAAGAATTTTCTTTGGTGCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATCAGAGTTGGTGCCACTTCTCGAAAGGCAATACCTGCCCTTGTTGATCTGCTTAAACCAATTCCAGATCGTCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACCCAGCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCTTGGAGGCAATAACTAAATATCTTTCGCTAGGTCCTCAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTGGCAGTGCTGAGATACGGAGACATGAATCTGCGTTTGGTGCTGTCACTCAACTTGTGGCTGTCCTGCGTTTAGGAGGAAGAGCTGCAAGGCATAGCGCTGCAAAAGCCTTAGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGATACTGCTCGACAAGCTGTTAAACCCTTGGTAGAGATTCTTAATACAGGTCTAGAGAGGGAGCAGCACGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAACCCTTCAAGAGCACTCGCTGTTGCAGATGTGGAGATGAACGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTGTGTTGTGTTCTTTTTGCAAATACAAGGATTCGGTCTACGATGGCTGCTGCACGCTGTGTGGAACCTCTGGTCTCTCTCCTTGTAAGCGAGTTTGGTCCAGCTCAACACTCTGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTCGCTGAATTAGTTGCTGCACATGGTGCAGTTATCCCTCTTGTTGGCCTACTGTATGGTAGGAACTATGTTCTTCATGAGGCCATATCGAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAGTGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCTTGAAGCACCTGACTATCTATGTGCAGCTTTTTCGGAACTCTTGCGGATATTGACAAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTAGATCCCCTGTTTTCTATGCTGACGAGACAAGAATTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCACAGTGTCGTGCTGATTACACGTTGACTTCCCACCAAGCTATTGAGCCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTACAACAATTGGCTGCTGAACTTCTCTCACATCTACTTTTAGAAGAACACCTTCAGAAAGATCCAGTGATTCAACAAGTAATTGGCCCGCTCATAAGAGTTCTTGGTTCTGGTATACACATTTTGCAGCAGAGAGCTATGAAGGCCCTTGTTAGTATTGCACATATATGGCCTAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCATTCCCCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCATGTGTTCTGCAATTTAGTTCTGAATTCTACTTGGAGGTGCCTGTTGCTGTTTTAGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACAGTTGTTGGTGCATTAAATGCCCTTCTTGTGTTGGAAAGTGATGATGGAACCAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAAGCTCTCTTGGAGCTCCTAAGATCTCATCAATGCGAGGAAACTGCTGCAAGACTCTTGGAAGTATTGCTAAACAATGTGAAGATCAGAGAAACCAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAGCCAAGGCTATTAGCAACTTTGGCTCTTGGTGATTTATTCCAGAATGAAAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGGGCTTTAGTGAATGTGCTCGAGGAGCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTAATGTACAGTAGATCAAATAAAAGAGCAGTTGCAGAGGCCGGTGGTGTTCAGGTGGTTCTAGATCTGATAGGTTCTAGTGATCCTGAAACATCTGTTCAGGCTGCGATGTTTATAAAACTTCTGTTTTCAAATCACACTATTCAGGAGTATGCTTCCAGTGAAACAGTCAGAGCAATAACCGCTGCTATTGAGAAAGATTTGTGGGCTACCGGAACTGTGAATGAGGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGATTGAGAGCAACTGAACCGGCAACTCTTAGCATTCCTCATCTCGTTACATCCTTAAAGACAGGCTCAGAGGCTACACAGGAAGCTGCCTTAGACACACTCTCTCTGCTCAGGCAAGCTTGGACTGCATGCCCGGCAGAAGTTTCAAGAGCTCAATCCATAGCAGCTGCAGATGCTATTCCTTTGCTACAATACTTAATCCAGTCAGGCCCGCCTCGGTTTCAGGAAAGGGCAGAATTCTTGTTGCAGTGTTTGCCTGGTACACTGGTGGTGATCATCAAGCGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGCAAGCTGACACTTGGCAATACTCCTGCACGGCAGACCAAGGTGGTCTCAACTGGCCCCAATCCGGAATGGGACGAAAGCTTTTCATGGGCCTTTGAAAGTCCTCCTAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGGAAGAGTTCATTTGGAAAAGTGACAATTCAAATTGATCGGGTAGTAATGCTGGGAGCAGTATCTGGAGAGTACACACTCTTGCCGGAAAGTAAAAGTGGCCCCTCAAGGAATTTGGAAATAGAATTTCAATGGTCCAACAAGTGA 6459 0.4344 MATTLTWRLAANNGTTLAANDLERNGDGKVQDTESPTPHSVLKMGLRERSSSMEDPDGTLASVAQCIEQLRKSSSSMLEKENSLKQLSELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSGEGQVAAAKTIYAVSQDGAKDHVGSKIFSTEGVVPVLWEQLKKGMKTGNVVDNLLTGALKNLSSSTEGFWNATVQAGGVDILVKLLTTGQSGTQANVCFLLAFLMMEDASICSKVLAAEATKHLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARREIANSNGIPTLINATIAPSKEFMQGEHAQALQENAMCALANISGGLSSVISSLGQSLESCTSAAQIADTLGALASALMIYDEKAESTRASDPLAVEQTLLNQFKSQSPFLVQERTIEALASLYSNPILSIKLTNSDAKRLLVGLITMATSEVQDELLKALLTLCNSGGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVPLSDILREGSAASDAIGTMIKILGSTKEETQAMSAAALAGLFETRKDVRESSIAVKTLLSVSKLLNVEYESVLMETSHCLAAIFLSIKENRDVAAIARDTLSPLIALANSSVLEVAELATCAVANLILDGEIAEKAVAEEVIMPATRVLREGTISGKTHAAAAIARLLHSRQVDYAVTECVNRAGTVLALVSFLDSAINGSAATLEALDALAILSRSEKTSGKSKPAWTVLAEFPKSISPIVLSIADSTPTLQDKAIEILSRLCKDQPLVLGDTVATASGCISSIAKRIISTSTNVKKRIGGAAVLICAAKVNHQKLLEDLNFSNLCTDLVRSLVDMLNSSDSSLANHGDDNREVISICRHTKEESSDDQSNSGTAIISGANLAIWLLCILACHDEKSRIAIMEAGAIEVLSEKISNYFSQYSQIDDKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAANGLITLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEAITKYLSLGPQDATEEAATDLLGILFGSAEIRRHESAFGAVTQLVAVLRLGGRAARHSAAKALESLFSADHIRNADTARQAVKPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFANTRIRSTMAAARCVEPLVSLLVSEFGPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKVEMVKAGVIESILDILLEAPDYLCAAFSELLRILTNNASIAKGPSAAKVVDPLFSMLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVIQQVIGPLIRVLGSGIHILQQRAMKALVSIAHIWPNEIAKEGGVVEISKVILQADPSIPHALWESAASVLACVLQFSSEFYLEVPVAVLVRLLRSGSESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQPRLLATLALGDLFQNESLARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDTLSLLRQAWTACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQERAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPARQTKVVSTGPNPEWDESFSWAFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2153
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0790 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Amo10g0790 2152 SUPERFAMILY ARM repeat 1581 2029 IPR016024 -
Amo10g0790 2152 CDD C2 2033 2123 - -
Amo10g0790 2152 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2152 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Amo10g0790 2152 SUPERFAMILY ARM repeat 1366 1653 IPR016024 -
Amo10g0790 2152 Coils Coil 297 324 - -
Amo10g0790 2152 SUPERFAMILY ARM repeat 1187 1419 IPR016024 -
Amo10g0790 2152 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2152 - -
Amo10g0790 2152 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Amo10g0790 2152 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Amo10g0790 2152 Gene3D - 49 411 IPR011989 -
Amo10g0790 2152 ProSiteProfiles C2 domain profile. 2012 2129 IPR000008 -
Amo10g0790 2152 Gene3D - 873 1173 IPR011989 -
Amo10g0790 2152 SMART arm_5 817 859 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 1399 1439 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 1230 1271 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 311 360 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 567 607 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 268 309 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 733 771 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 1185 1228 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 1731 1770 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 1440 1480 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 94 135 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 1567 1608 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 525 565 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 1858 1898 IPR000225 GO:0005515
Amo10g0790 2152 SMART arm_5 136 176 IPR000225 GO:0005515
Amo10g0790 2152 SUPERFAMILY ARM repeat 341 643 IPR016024 -
Amo10g0790 2152 Gene3D C2 domain 2030 2152 IPR035892 -
Amo10g0790 2152 Gene3D - 412 646 IPR011989 -
Amo10g0790 2152 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2149 IPR035892 -
Amo10g0790 2152 Gene3D - 1701 1804 IPR011989 -
Amo10g0790 2152 Gene3D - 1805 2029 IPR011989 -
Amo10g0790 2152 Gene3D - 647 869 IPR011989 -
Amo10g0790 2152 SUPERFAMILY ARM repeat 1026 1160 IPR016024 -
Amo10g0790 2152 MobiDBLite consensus disorder prediction 19 38 - -
Amo10g0790 2152 Gene3D - 1319 1696 IPR011989 -
Amo10g0790 2152 SMART C2_3c 2032 2128 IPR000008 -
Amo10g0790 2152 Pfam C2 domain 2031 2127 IPR000008 -
Amo10g0790 2152 Gene3D - 1177 1318 IPR011989 -
Amo10g0790 2152 SUPERFAMILY ARM repeat 74 393 IPR016024 -
Amo10g0790 2152 SUPERFAMILY ARM repeat 659 987 IPR016024 -
Amo10g0790 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo10g0790 Amo-Chr10 11964138 11974602 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0790 496 684 U-box Gene Family AT3G46510 32.512 2.42e-09 60.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0790 - - gmx:100816765 3669.01