LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g0739	ATGTCACCTTTCAATATCACATTTCTAGTCACAATTTTCCTCTCTCTTTTCTTCCCAACCCTTGGTAAAGTTGATCCAACATTGTCAAGGCCTAAATCCCAAACATTATCATACATAGAGTCCTCTTGCAATGGCACTCTCTACCGTGAACTATGTATCCGTTCCCTTTCGAAATTCGCCAGCACCAATGAAATCGACGGTCCACAACACTTAGCACATGTTGCCTTGTCAATTAGCCTTGCTAGGGCAATCCACACAAAGAACTTCTTGGTGGGAGTTTCCAAGGAACTCGACGCGATTAACAACCTCAACAACAATAACAATAACAATAACGACAGAAAGAAGAGAAGGGAGTACCAAACAATTCAAGATTGTGTGAATCAACTAAGTGATAGTGTTGACCAACTTAGTCAATCAATCAAGGAGCTAAGAAGGATGAACAACAAAAGTAGATCAACAATAAATGATGATTTCTTGTGGCATATTAACAATGTTGAGACATGGGTTAGCACTGCCTTAACAGATGCTAGTAGTTGTGTTTATGCATTCCCTGGCCATAGAATGAGTAAGAGAACAGCTTCAATTAGGGGTAAGGCCATGAATGTTGCACAAGTTACTAGCAATGCATTAGCCTTCATTCATAAGTACATGGAAGCAGCAACAAGGAACACCAAGCCTTGA	681	0.4023	MSPFNITFLVTIFLSLFFPTLGKVDPTLSRPKSQTLSYIESSCNGTLYRELCIRSLSKFASTNEIDGPQHLAHVALSISLARAIHTKNFLVGVSKELDAINNLNNNNNNNNDRKKRREYQTIQDCVNQLSDSVDQLSQSIKELRRMNNKSRSTINDDFLWHINNVETWVSTALTDASSCVYAFPGHRMSKRTASIRGKAMNVAQVTSNALAFIHKYMEAATRNTKP*	227

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g0739	226	Pfam	Plant invertase/pectin methylesterase inhibitor	38	211	IPR006501	GO:0004857
	Amo10g0739	226	TIGRFAM	PME_inhib: pectinesterase inhibitor domain	7	216	IPR006501	GO:0004857
	Amo10g0739	226	PANTHER	BNAANNG18590D PROTEIN	8	219	-	-
	Amo10g0739	226	SMART	PMEI_2	34	212	IPR006501	GO:0004857
	Amo10g0739	226	Coils	Coil	126	153	-	-
	Amo10g0739	226	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	38	216	IPR035513	-
	Amo10g0739	226	PANTHER	PECTINESTERASE INHIBITOR-LIKE	8	219	-	-
	Amo10g0739	226	CDD	PMEI-like_3	41	216	-	-
	Amo10g0739	226	Gene3D	Invertase/pectin methylesterase inhibitor family protein	34	216	IPR035513	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g0739	Amo-Chr10	10885583	10886555	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g0739	26	212	Carbohydrate Esterase	AT3G49220	25.668	3.18e-08	51.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g0739	-		-	gmx:100807870	247.284

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