Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0729 ATGGCAGCAGCTATAGATATATACAATAGCATGATGACACAAGATTACTTATCATACTCTTGTAGTGATGAAGAGTTGATGAAAGCACTTGAGCCTTTTATTATGACAAGTGATTATTTTTCATCTAATTCTAATAATAGCAATAGTAACGATAATAATTCCTTACCCTCTTTTTCTCTCTCACCTTCTTCCCCTGCATCATCATCATCATCACTATACCCTTCTTATTACAATTCCTTCACTTCTAATTACAACCCTTCACCGTTAAATTCTACCACCCAAAGTTCCTCCATAAGACTCAACCAACTCACGCCATCTCAAATTCTCCAAATCCAATCACAAATCCATGTTGCACAACAACAAGAAAAGAATCAACATGCTTTGTTTCTAGGGCCAAAACCTGCCCCCATGAAGCATGCCGGCGTGACGAATTCCTCTGCGGCCGCGAAGCCTACAAAGCTCTACCGAGGGGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCAGAGATAAGGCTACCAAAGAACCGAACCCGTCTTTGGCTTGGAACATTCGAAACGGCTGAAGAAGCAGCGTTGGCTTATGACAACGCTGCTTTTAAGTTAAGAGGAGAACTTGCACGGCTTAATTTCCCTCACCTTCGCCACCACGGGGCACGCGTGTACGGTGAATTCGGGGAAATCAAGCCGTTACCCTCTTCGGTGGACGCGAAACTCCAAGCCATTTGTGAAGGCTTGGAGAAAACAGAGAAGGTTGTAGTGGATACAAAGCCTAAGATAGAGGAAAATGCAACTGAATCCGACGTTGGATTTGGTTGTGCTGAGTTTGAGGATTATAAGTTGGAGAAGAAGCCAAAGTTGTCTCCTCCTTTGTTGTCTGATGAATCATCCGCTGCGGGCGGTGTGTCTTCGCCGGAATCCGATATCACTTTCTTGGATTTCTCGGATCCAGATGAAATTGATAACCTTGGGTTGGATTTGAAGAAGTATCCTTCAGTGGAGATTGATTGGGCGTCTATATGA 1020 0.4402 MAAAIDIYNSMMTQDYLSYSCSDEELMKALEPFIMTSDYFSSNSNNSNSNDNNSLPSFSLSPSSPASSSSSLYPSYYNSFTSNYNPSPLNSTTQSSSIRLNQLTPSQILQIQSQIHVAQQQEKNQHALFLGPKPAPMKHAGVTNSSAAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGELARLNFPHLRHHGARVYGEFGEIKPLPSSVDAKLQAICEGLEKTEKVVVDTKPKIEENATESDVGFGCAEFEDYKLEKKPKLSPPLLSDESSAAGGVSSPESDITFLDFSDPDEIDNLGLDLKKYPSVEIDWASI* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0729 339 Gene3D AP2/ERF domain 154 212 IPR036955 GO:0003700|GO:0006355
Amo10g0729 339 MobiDBLite consensus disorder prediction 286 309 - -
Amo10g0729 339 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Amo10g0729 339 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Amo10g0729 339 Pfam AP2 domain 155 204 IPR001471 GO:0003700|GO:0006355
Amo10g0729 339 ProSiteProfiles AP2/ERF domain profile. 154 211 IPR001471 GO:0003700|GO:0006355
Amo10g0729 339 CDD AP2 153 213 IPR001471 GO:0003700|GO:0006355
Amo10g0729 339 SMART rav1_2 154 217 IPR001471 GO:0003700|GO:0006355
Amo10g0729 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 339 - -
Amo10g0729 339 MobiDBLite consensus disorder prediction 42 61 - -
Amo10g0729 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 339 - -
Amo10g0729 339 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0729 Amo-Chr10 10670678 10672397 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0729 1 339 AP2-EREBP Transcription Factor Family AT1G78080 47.191 1.59e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo10g0729 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0729 K09286 - gmx:100815162 309.686