Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0725 ATGGCAGCAGCTATAGATATATACAATAGCATGATGACACAAGATTACTTATCATACTCTTGTAGTGATGAAGAGTTGATGAAAGCACTTGAGCCTTTTATTATGACAAGTGATTATTTTTCATCTAACTCTAATAATAGCAACAGTAACTATAATAATTATTTACCCTCTTTTTCTCTCTCACCTTCTTCCCCTGCTTCATCATCATCACTATACCCTTCTTATTACAATTCCTTCACTTCCAATTACAACCCTTCACCGTTAAATTCTACCACCCAAAGTTCCATAAGACTCAACCAACTCACGCCATCTCAAATTCTCCAAATCCAATCACAAATCCATGTTGCACAACAACAAGAAAAGAATCAACATGCTTTGTYYCTAGGGCCAAARCCTGYCCCCATGAAGCATGCCGGCGTGACGAATTCCTCTGCGGCCGCGAAGCCTACAAAGCTCTACCGAGGGGTGAGGCAAAGGCATTGGGGAAAATGGGTRGCAGAGATAAGGCTACCAAAGAACCGAACCCGTCTTTGGCTTGGAACATTCGAAACGGCTGAAGAAGCAGCGTTGGCTTATGACAACGCTGCTTTTAAGYTAAGAGGAGAACTTGCACGGCTTAATTTCCCTCACCTTCGCCAYCRCGGGGCACRCGTGTAYGGTGAATTCGGGGAAATCAAGCCGTTACCCTCTTCGGTGGACGCGAAACTCCAAGCCATTTGTGAAGGCTTGGAGAAAACAGAGAAGGTTGTAGTGGATACAAAGCCTAAGATAGAGGAAAATGCAACTGAATCCRACGTTGGATTTGGTTGTGCTGAGTTTGAGGATTATAAGTTGGAGAAGAAGCCAAAGTTGTCTYCSCCTTTGYTGTCTGATGAATCRTCCGCYGCGGGCGGTGTGTCTTCGCCAGAATCCGATATCACTTTCTTGGATTTCTCGGATCCAGATGAAATTGATAACCTTGGGTTGGATTTGAAGAAGTATCCTTCAGTGGAGATTGATTGGGCGTCTATATGA 1014 0.432 MAAAIDIYNSMMTQDYLSYSCSDEELMKALEPFIMTSDYFSSNSNNSNSNYNNYLPSFSLSPSSPASSSSLYPSYYNSFTSNYNPSPLNSTTQSSIRLNQLTPSQILQIQSQIHVAQQQEKNQHALXLGPKPXPMKHAGVTNSSAAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGELARLNFPHLRHXGAXVYGEFGEIKPLPSSVDAKLQAICEGLEKTEKVVVDTKPKIEENATESXVGFGCAEFEDYKLEKKPKLSXPLLSDESSAAGGVSSPESDITFLDFSDPDEIDNLGLDLKKYPSVEIDWASI* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0725 337 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700|GO:0006355
Amo10g0725 337 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700|GO:0006355
Amo10g0725 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 337 - -
Amo10g0725 337 SMART rav1_2 152 215 IPR001471 GO:0003700|GO:0006355
Amo10g0725 337 CDD AP2 151 211 IPR001471 GO:0003700|GO:0006355
Amo10g0725 337 Pfam AP2 domain 153 202 IPR001471 GO:0003700|GO:0006355
Amo10g0725 337 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700|GO:0006355
Amo10g0725 337 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700|GO:0006355
Amo10g0725 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 337 - -
Amo10g0725 337 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0725 Amo-Chr10 9783250 9784966 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0725 1 337 AP2-EREBP Transcription Factor Family AT1G78080 46.281 3.87e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo10g0725 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0725 K09286 - gmx:100815162 303.523