Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0684 ATGTCCGCTCCCATAAATCAGTCTGAGGATCCGAATTCTCCGGATCCGAATTGGAATTCGGATCCACAACTTCCGCTCCGTAACCTCGAACAGATCCGAACCCGACTCGATTCCCTCCATCGCTTTTTATCGGAATCCATCACCTCCAACAACCCTCTCTCCGGCGACCAATCCGCCGCCGTCTCCGATCAAATCGCCTCCGCCATCCACCAAAGCATCGCCAACGCCTCCGCCCTCGTCTCCTACTCTAAAACCTTCCACCCGCCGGGTTCCACTCCCGCCGCCGCGCCGCCGTTACCTAGGGTTGACCTATCAGCCAGTGTCGAGAAACTCAAACGCGCGTCGGATCTGAAAATCGAGCCGCCGGACGAGGACACCGCAACCGATGAGTTTGCCGATAGCGACGAGATCGTGGAGCTCGACGCCGTGGAGATCCTCGCGGAGCACCTTCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGAGACGCGAATCTGCGCATGCATATGCGCGCTCACGGGAACCAGTTCAAGACACCGGAGGCACTCGCGAAGCCGGAGAATCCGTCGTCCGCCGCCGTGCGCAGCCGGTTCTCGTGCCCGTTCGAGGGATGCAACAGGAACAAGAACCACCGGCGCTTCAGGCCGCTGAAATCGATGGTGTGTGTGAAGAATCACTTCAAGAGAAGCCACTGCCCGAAGATGTATTCGTGCACGCGGTGCCATAAGAAGAGCTTTTCGGTGCTCTCTGATCTGAAGAGCCACATGAAGAATTGCGGAGAGTCGAAGTGGAAGTGCTCTTGTGGGACCACGTTCTCAAGAAAGGATAAACTTTTTGGGCACATTGCTTTGTTTGAAGGGCATGTACCCTTGCTTGAAGACGATAATAAGGGCAAGCATGTGCAGGAAGATGATGATAGTGATCATTTTAGTGATTTGCCTGATGGCTTTTTTGATGATTTGGGTGATTTGAGCTCTTTAGGGTTTCCCTTAATTTAA 999 0.5455 MSAPINQSEDPNSPDPNWNSDPQLPLRNLEQIRTRLDSLHRFLSESITSNNPLSGDQSAAVSDQIASAIHQSIANASALVSYSKTFHPPGSTPAAAPPLPRVDLSASVEKLKRASDLKIEPPDEDTATDEFADSDEIVELDAVEILAEHLHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPENPSSAAVRSRFSCPFEGCNRNKNHRRFRPLKSMVCVKNHFKRSHCPKMYSCTRCHKKSFSVLSDLKSHMKNCGESKWKCSCGTTFSRKDKLFGHIALFEGHVPLLEDDNKGKHVQEDDDSDHFSDLPDGFFDDLGDLSSLGFPLI* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0684 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Amo10g0684 332 Pfam Zinc finger, C2H2 type 152 173 IPR013087 -
Amo10g0684 332 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 12 308 - -
Amo10g0684 332 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Amo10g0684 332 MobiDBLite consensus disorder prediction 1 26 - -
Amo10g0684 332 Gene3D Classic Zinc Finger 218 290 - -
Amo10g0684 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 308 IPR044300 GO:0010044|GO:0010447
Amo10g0684 332 SMART c2h2final6 236 257 IPR013087 -
Amo10g0684 332 SMART c2h2final6 151 173 IPR013087 -
Amo10g0684 332 SMART c2h2final6 198 231 IPR013087 -
Amo10g0684 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Amo10g0684 332 Gene3D Classic Zinc Finger 151 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0684 Amo-Chr10 8803588 8804948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0684 134 292 C2H2 Transcription Factor Family AT1G34370 63.190 2.26e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo10g0684 zf-C2H2 0.00022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0684 - - cam:101491258 387.497