Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g0677 ATGCTTTTGGCAGATATGTCATATGTTTTTTATTTTTTATTCCTTTCTTTCTGTATGAATTATGATGATCCTGTTCTTTCAGAGGAAGCCCTATATGCATTGAAGTTATCATTGAATGCTTCAAAAAATCAGCTTACTAACTGGAATAGAGACCAAGTCAGCCCGTGCACTTGGTCTAATGTTTACTGTGACCCAAGTGGCAATATTTATCAAGTTTCACTAGCATTTATGGGATTTACAGGATACTTGACACCAAGAATAGGAGCATTAAAAGGTCTTCAAACTCTTGTTCTAAATGGGAATGGCATCACTGGAGGTATACCAAAAGAATTAGGAAACCTTACAAGATTAGTCAGATTGGATCTGCAAAACAACAGATTAACCGGTGAAATACCCTCTTCCCTTGGTAACCTTAAAAAGCTTCAGTTCTTAACATTGAGTCAAAACAACCTCAACGGATCTATTCCTGAATCATTAGCCAATCTTCCAAGCCTGATCAATGTTCTTCTAGATTCAAATGATCTCAGTGGTCAGATTCCAGAAGGCTTATTCAATGTTTCTAAATACAATTTCACTGGAAATAAGTTGAACTGTGGCATGAATTATCGTAAACTTTGTGCCTATGATATTGCAGACCAAGGTTTAGTTGTTCTTATTTGTCTTGGTGGTCTACTGTTCTTCTGGCGCAAGAGCTACAAGCGTGATGTTTACGTAGATGTTGCAGGTGAAGTTGATGGGCGAATTGCATTTGGTCAGCTGAAAAGATTTGCTTGGAGAGAACTGCAAATAGCTACAGACAACTTTAGTGAGAGAAATGTTTTAGGACAGGGAGGCTTTGGGAAGGTTTATAAAGGTGTTCTACCCGATGGCACAAAAATTGCTGTTAAAAGGTTAACCGATTATGAAAGTCCGATGATAAGTGTAGCTGTCCATAGGAACTTGTTACGGCTGATTGGGTTCTGTACGACTCCAACGGAGCGCCTATTAGTCTATCCCTTCATGCAGAACCTAAGTGTTGCCTATCGTCTTCGAGAACTTAAACCTGGGGAGGCTGTTTTGGATTGGCCTACGAGAAAAAAAGTGGCTCTGGGAACAGCCCGAGGCCTAGAATATCTTCATGAGCAATGCAATCCTAAGATTATCCATCGGGATGTGAAGGCAGCTAATGTATTACTGGATGGAGACTTCGAGGCAGTTGTAGGAGACTTCGGTTTAGCAAAGTTAGTTGACGTTCGAAGGACTAATGTGACAACTCAAGTTCGTGGGACCATGGGCCACATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAAGACTGATGTCTTCGGATATGGAATAATGCTTCTAGAGCTTGTTACAGGTCAACGGCAATTGACTTTTCACGTTAAGAAACTTGAACGGGAGAAAAGACTAGATGCTATTGTTGATCGCAACCTGAAACAAAATTACAAAATAGAAGAAGTTGAAATGATTGTTCAAGTTGCATTACTCTGCACACAAGCATCACCAGAGGACCGACCAGCAATGTCGGAGGTCGTGAGAATGTTGGACGGAGAAGGACTGGCCGAAAGGTGGGAGGAATGGCAACACGTAGAGGTCAACCGGAGGCAGGATTACGAGAGACTGCAAAGAAGATTGGGGTGGGGAGAAGATTCAATAAATAACCAAGATGCCATTGAGTTGTCTGGTGGAAGATGA 1704 0.4126 MLLADMSYVFYFLFLSFCMNYDDPVLSEEALYALKLSLNASKNQLTNWNRDQVSPCTWSNVYCDPSGNIYQVSLAFMGFTGYLTPRIGALKGLQTLVLNGNGITGGIPKELGNLTRLVRLDLQNNRLTGEIPSSLGNLKKLQFLTLSQNNLNGSIPESLANLPSLINVLLDSNDLSGQIPEGLFNVSKYNFTGNKLNCGMNYRKLCAYDIADQGLVVLICLGGLLFFWRKSYKRDVYVDVAGEVDGRIAFGQLKRFAWRELQIATDNFSERNVLGQGGFGKVYKGVLPDGTKIAVKRLTDYESPMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKKVALGTARGLEYLHEQCNPKIIHRDVKAANVLLDGDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRQLTFHVKKLEREKRLDAIVDRNLKQNYKIEEVEMIVQVALLCTQASPEDRPAMSEVVRMLDGEGLAERWEEWQHVEVNRRQDYERLQRRLGWGEDSINNQDAIELSGGR* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g0677 567 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
Amo10g0677 567 Pfam Protein kinase domain 269 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0677 567 SUPERFAMILY L domain-like 29 197 - -
Amo10g0677 567 Gene3D Transferase(Phosphotransferase) domain 1 334 538 - -
Amo10g0677 567 ProSiteProfiles Protein kinase domain profile. 268 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0677 567 Gene3D Phosphorylase Kinase; domain 1 237 333 - -
Amo10g0677 567 SUPERFAMILY Protein kinase-like (PK-like) 250 518 IPR011009 -
Amo10g0677 567 PANTHER LRR RECEPTOR-LIKE KINASE 16 567 - -
Amo10g0677 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Amo10g0677 567 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 567 - -
Amo10g0677 567 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Amo10g0677 567 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Amo10g0677 567 SMART serkin_6 268 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g0677 567 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g0677 Amo-Chr10 8631775 8637640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g0677 3 567 Receptor kinase-like Gene Family AT5G10290 67.270 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo10g0677 Pkinase 5.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g0677 - - gmx:100793416 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1111 20 20671204 20677126 Amo10g0677 10 8631775 8637640 hybridization
Amo10g0677 10 8631775 8637640 Amo13g5570 13 157386095 157391958 PCT