Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo10g0663 | ATGGGCAACTTGGTCATTGCATACATTATTTTAGCCTTTTATTCTCTCTTCATTATTGTGCATGGCACTGATAAGTTATCATGCAATCAAACTCCATATCCCACTCTTTGTAACCATTACATTGGCACTACCAATTATTCAATTTCATCATCATCAAGTGATGATGTTTCCTTCCATGACATTGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACGATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATATATCAGCTGAACCGTTCAATGAGCTCAAACAATCTAAACGACAGGTTAACATGGCAAAGTGCTTCTATTGCGAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAAGCAACTTATCCAAGTTGCTGAGCAACTCTTTGGCCATTAGCAATACATTAACGTCCTTGACTTCGTTACCAAAAGACCCGGTTGTTCGCGGCGGTCGAAAATTGCTTTCCTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGCTTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGCGGCGGCCGGTAGGCTGAGTAAGAATGGTCGAGTGGTTGTGTACGTGAAAGCTGGCGTTTACCGAGAGAGTGTGAACATAAAGGGAGGGATAAAGAATTTGACACAAGGGAGAACCGATCCCAATGAGAACACCGGCATTGTCATCCACAACTGCCGTATCATGGCGGCTTCAGATCTGAAGCCAGTTCAGGGATCTGTCAAGTGCTTCCTCGGCCGGCCGTGGCAGAAGTACTCAAGAACGGTAGTGGTCAAGAGTAGCCTGGACGGTTTGATTCAACCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCCTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCTGGTGCTAACACTGCAGGGAGGGTTAAATGGCTGGCTTTCATGTTATTA | 1122 | 0.459 | MGNLVIAYIILAFYSLFIIVHGTDKLSCNQTPYPTLCNHYIGTTNYSISSSSSDDVSFHDIALKVTMDQAIVAHKLVSSTMESNDFKDKRAKSAWEDCLELYENTIYQLNRSMSSNNLNDRLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISSNLSKLLSNSLAISNTLTSLTSLPKDPVVRGGRKLLSFNGFPEWLSPSDRRLLQALPGTAAPKADIVVAQDGSGNYKSVSEGVAAAGRLSKNGRVVVYVKAGVYRESVNIKGGIKNLTQGRTDPNENTGIVIHNCRIMAASDLKPVQGSVKCFLGRPWQKYSRTVVVKSSLDGLIQPAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWLAFMLL | 374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo10g0663 | 374 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 25 | 174 | IPR035513 | - | |
| Amo10g0663 | 374 | SUPERFAMILY | Pectin lyase-like | 215 | 370 | IPR011050 | - | |
| Amo10g0663 | 374 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 27 | 174 | IPR006501 | GO:0004857 | |
| Amo10g0663 | 374 | Pfam | Pectinesterase | 221 | 273 | IPR000070 | GO:0030599|GO:0042545 | |
| Amo10g0663 | 374 | Pfam | Pectinesterase | 274 | 371 | IPR000070 | GO:0030599|GO:0042545 | |
| Amo10g0663 | 374 | Gene3D | - | 274 | 373 | IPR012334 | - | |
| Amo10g0663 | 374 | CDD | PMEI-like_3 | 26 | 175 | - | - | |
| Amo10g0663 | 374 | Pfam | Plant invertase/pectin methylesterase inhibitor | 27 | 169 | IPR006501 | GO:0004857 | |
| Amo10g0663 | 374 | PANTHER | PECTINESTERASE INHIBITOR 5-RELATED | 274 | 371 | - | - | |
| Amo10g0663 | 374 | PANTHER | PECTINESTERASE INHIBITOR 5-RELATED | 19 | 273 | - | - | |
| Amo10g0663 | 374 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 27 | 174 | IPR035513 | - | |
| Amo10g0663 | 374 | PANTHER | PECTINESTERASE | 274 | 371 | - | - | |
| Amo10g0663 | 374 | PANTHER | PECTINESTERASE | 19 | 273 | - | - | |
| Amo10g0663 | 374 | Gene3D | - | 201 | 273 | IPR012334 | - | |
| Amo10g0663 | 374 | SMART | PMEI_2 | 19 | 169 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo10g0663 | Amo-Chr10 | 8323244 | 8326547 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo10g0663 | 275 | 374 | Carbohydrate Esterase | AT1G23200 | 50.000 | 1.30e-28 | 115 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo10g0663 | - | - | aip:107646806 | 445.662 |